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  • Manner, Aino (2020)
    Osa keskushermostoon vaikuttavista lääkkeistä on riippuvuutta aiheuttavia ja päihteinä käytettyjä. Tämä on olennaista huomioida jo ennen uusien lääkkeiden markkinoille tuloa. Lisäksi on tärkeää yrittää ymmärtää yhä paremmin jo käytössä olevien, mutta väärinkäytettyjen lääkkeiden toimintaa. Erityisesti Yhdysvaltojen tämänhetkinen opioidiepidemia on nostanut esille tällä hetkellä käytössä olevien opioidien haittavaikutukset. Lääkkeen riippuvuuspotentiaalia voidaan mitata monilla eri tavoin. Ehdollistettu paikkahakuisuus (CPP) mittaa tutkittavan aineen palkitsevia ominaisuuksia ja perustuu klassiseen ehdollistumiseen. Menetelmä on hyvin vakiintunut ja soveltuu käytettäväksi eri eläinlajeilla. Menetelmää ei kuitenkaan ole validoitu ihmisillä, ja on syytä huomata, että todellisuudessa ehdollistumistapahtumat voivat olla monimutkaisempia. Tarkastelen tutkielmassani keskushermostoon vaikuttavan lääkeainekandidaatti ganaxolonen väärinkäyttöpotentiaalia ehdollistetun paikkahakuisuuden avulla. Tutkimuksessa käytettiin poistogeenisiä hiiriä, joilta puuttuu toimiva GABAA –reseptorin δ-alayksikkö, sekä villityypin hiiriä. Paikkahakuisuuden sijaan ganaxolonen havaittiin aiheuttavan paikka-aversiota villityypin hiirillä, mutta ei poistogeenisillä hiirillä. Täten vaikuttaa siltä, että lääkkeellä ei luultavasti ole väärinkäyttöpotentiaalia. Lisäksi tutkin samanlaisilla hiirillä morfiinin vaikutusta kivuntuntemiseen. Tässä tutkimuksessa havaitsin, että kyseiset poistogeeniset hiiret olivat herkempiä morfiinin kipua vähentävälle vaikutukselle kokeessa, joka mittaa kipureaktioita spinaalitasolla, mutta supraspinaalireaktioita mittaavassa kokeessa eroa ei havaittu. Lisäksi poistogeenisillä hiirillä ei havaittu paikkahakuisuutta morfiinin suhteen. Tätä tietoa voidaan mahdollisesti myöhemmin hyödyntää kehitettäessä tehokkaampia kipulääkkeitä tai lääkeyhdistelmiä, joilla olisi pienempi riippuvuuspotentiaali.
  • Paasikoski, Nelli (2016)
    γ-Aminobutyric acid (GABA) is the main inhibitory neurotransmitter in the central nervous system. It acts upon two classes of GABA receptors: ionotropic and metabotropic. The GABAB receptor is a metabotropic G protein-coupled receptor (GPCR) that associates with the Gαi/o family of G-proteins causing inhibitory actions via the inhibition of adenylyl cyclase. Baclofen, a GABAB receptor agonist, has recently been found to be a potential treatment of alcohol addiction by suppressing the drug craving stage of the addiction cycle. However, the adverse side effects of baclofen including sedation and hypothermia, as well as its narrow therapeutic index, have limited its clinical use in the treatment. Positive allosteric modulators may be the answer to providing more selective and personalised treatments. These modulators function by enhancing or attenuating the response activated by the agonists, while having little inherent intrinsic activity. Therefore, they are less likely to cause adverse effects while also reducing the dosage of the agonistic drugs, essentially diminishing the adverse effects of the agonist. Mu-opioid receptor antagonists have been available for the treatment of alcohol and drug addiction for over 20 years. Preclinical studies have found that a continuous infusion of naltrexone has led to the increased consumption of ethanol after the drug has been metabolised out of the system. Furthermore, nalmefene, a specific and potent opioid antagonist has been developed and shown to have therapeutic advantages over naltrexone. Our study wanted to compare sex-specific brain-wide distribution of G-protein coupling after activation of GABAB receptors by baclofen and the positive allosteric modulator RacBHFF in ten RccHan®:WIST albino male and female rats, and compare species differences between the rats and five wildtype C57BL/6J male mice. Furthermore, we wanted to determine whether G-protein coupling of GABAB receptors is altered in sixty female AA (Alko, Alcohol) alcohol-preferring rats with and without various modes of treatments with naltrexone and nalmefene (7 daily injections or 7-day continuous infusion using osmotic minipumps at equipotent low and moderate doses). We did this using [35S]GTPγS autoradiography as means to measure the efficacy and potency of different concentrations of RacBHFF combined with 30 µM baclofen. Our results showed that RacBHFF does have positive allosteric activity on baclofen-stimulated GABAB receptor-mediated G-protein activation and the extent of it was regionally dependent. RacBHFF had greatest efficacy in the cerebellum, cortex and thalamus in all the samples studied. Furthermore, 30 µM baclofen alone and 10 µM RacBHFF alone are not enough to produce a statistically significant enhancement in GABAB activity in all brain regions, but RacBHFF combined with baclofen does. High concentrations of RacBHFF (100 and 300 µM) led to the complete inactivation of the receptors with G-protein coupling levels falling below non-specific binding levels, thus indicating tolerance. This was noticed in both of the sexes, as well as both of the species, indicating high system stability. Furthermore, there were no statistically significant differences between the species, and only minor regional statistically significant differences between the sexes. Comparing the regional baclofen-stimulated GABAB receptor-mediated G-protein activation between the two rat models showed that there are slight statistically significant differences, most of which are present in the nucleus accumbens, a part of the mesolimbic dopamine reward pathway. In addition, continuous 7-day infusions of a moderate dose (4 mg/kg) of nalmefene produced the greatest statistically significant enhancement of receptor stimulation by RacBHFF and baclofen when compared to the saline-treated samples. Seven daily injections of the same dose of nalmefene also produced statistically significant RacBHFF and baclofen-stimulated GABAB receptor activation in the amygdala and medial habenular nucleus. Therefore, a moderate dose of nalmefene (either as a continuous infusion or repeated injections) seems to produce the greatest overall enhancement of RacBHFF-induced stimulation of GABAB receptors. In conclusion, our results reveal that depending on the concentration of RacBHFF and the location of the receptors, RacBHFF differs in its efficacy to GABAB receptors in both wildtype and treated animal models. Furthermore, our results provide the first preclinical evidence that in the presence of opioid receptor tolerance, the GABAB receptor remains rather unaltered although the signal transductions of opioid and GABAB receptors are identical. This suggests that a combinational therapy of the GABAB receptor PAMs with a mu-opioid antagonist may potentially enhance the anti-craving, anti-alcohol-consuming habits of alcohol-addicted individuals.
  • Takala, Sini (2021)
    Tausta: Sappirakkosyöpä on harvinainen ja huonoennusteinen syöpä länsimaissa. Tutkimuksen tavoitteena oli tutkia Etelä-Suomessa asuvien sappirakkosyöpäpotilaiden esiintyvyyttä, hoitoa ja selviytymistä. Tutkimusmenetelmät: Helsingin yliopistollisessa keskussairaalassa ja sen erityisvastuualueella (HYKS-ERVA, 2,2 miljoonaa asukasta) vuosina 2006-2017 radiologisesti tai histologisesti diagnosoidut primaaria sappirakkosyöpää sairastavat potilaat sisältyivät aineistoon. Potilastiedot kerättiin manuaalisesti Suomen Syöpärekisteristä ja Tilastokeskuksesta sekä potilaita hoitaneiden terveydenhuollon yksiköiden potilasasiakirjoista. Potilasaineisto analysoitiin SPSS-ohjelman avulla. Tulokset: Lopullinen kohortti sisälsi 270 sappirakkosyöpäpotilasta. Ilmaantuvuus oli 1,32/100 000 ihmistä ja se väheni 6,8 tapauksella per miljoona ihmisvuotta tutkimusjakson aikana. 104:llä potilaalla (38,5%) sappirakkosyöpä diagnosoitiin sattumalta sappirakon poistoleikkauksen jälkeen. Loput diagnosoitiin oireiden myötä ja hoidettiin leikkauksilla (n=15; 5,6%), solunsalpaajilla (n=60; 22,2%) tai oireenmukaisesti (n=91; 33,7%). 151 potilasta (55,9%) diagnosoitiin vasta stage IV-vaiheessa eli syöpä oli levinnyt sappirakon viereisiin verisuoniin, imusolmukkeisiin tai elimiin tai lähettänyt etäpesäkkeitä. 51 potilasta (18,9%) leikattiin kuratiivistavoitteisesti eli tavoitteena parantaa syöpä ja 96%:lla heistä leikkausmarginaalit olivat puhtaat syövästä eli R0. Elinajan mediaani sappirakkosyöpädiagnoosin jälkeen oli kokonaisuudessaan 7,1 kuukautta ja 5-vuotisennuste 11,6%. Kuratiivistavoitteisesti leikattujen potilaiden elinajan mediaani oli 67,7 kuukautta ja 5-vuotisennuste 56,8%. Kokonaisuudessaan sappirakkosyövästä selviytymisessä ei havaittu parannusta tutkimusjakson aikana. Pohdinta: Sappirakkosyövän ilmaantuvuus on Etelä-Suomessa matala ja hiukan laskenut tutkimusjakson aikana, mutta syövästä selviytyminen ei ole parantunut ajan myötä. Laajempi solunsalpaajien käyttö sekä kuratiivistavoitteisten leikkausten määrän lisääminen saattaisivat parantaa sappirakkosyövän ennustetta.
  • Snickars, Lina (2018)
    Gastropares är en komplikation vid diabetes och definieras som en fördröjning av magsäckens tömningshastighet. Allmänna symptom är uppsvälldhet, snabb mättnadskänsla, illamående och uppkastning. Gastropares är en av de mest allvarliga komplikationerna vid diabetes och eftersom det tidigare gjorts förhållandevis lite forskning om komplikationen finns det ett intresse av vidare studier i ämnet. Målet med avhandlingen är att analysera sjukdomsbilden vid gastropares hos patienter med typ 1-diabetes. Utöver diagnosen gastropares undersöks också förekomsten av gastrointestinala symptom hos studiepopulationen. Studien utförs på Folkhälsans forskningscenter, som har tillgång till ett omfattande patientmaterial på patienter med typ 1-diabetes via FinnDiane-studien. Analysen gav en prevalens för gastropares på 7,2% och en prevalens för besvärliga gastrointestinala symptom på 7%. Det framkom att patienter med gastropares generellt har betydligt mera gastrointestinala symptom, lider av mera diabetiska komplikationer och att patienterna kan kopplas till en del övriga faktorer som hög ålder, lång diabetesduration, högt blodtryck och lågt BMI. Ytterligare diskuteras problematiken kring diagnostisering av gastropares, bland annat av den orsaken att komplikationen saknar en egen diagnoskod i det vårdanmälningssystem som används för tillfället. Till följd av svår diagnostisering och avsaknad av diagnoskod finns en risk att symptom i mag- och tarmkanalen inte får tillräckligt med uppmärksamhet.
  • Perttula, Antti (2012)
    Gliasoluperäinen hermokasvutekijä (GDNF) aiheuttaa muutoksen n. 300 geenin ilmentymisessä munuaisen kehityksen aikana. Geenien paikantaminen auttaa käsittämään solujen toimintaa elinten kehittymisen aikana. Lisäksi GDNFn toiminnan ymmärtäminen voi mahdollistaa Parkinsonin taudin uusien hoitomuotojen kehittämisen. Tässä työssä geenien ilmentymistä tutkittiin in situ –hybridisaatiomenetelmällä ja siten pyrittiin selvittämään viiden geenin merkitystä munuaisen kehityksessä. Visninlike-protein-1 (VSNL-1) lienee tutkituista geeneistä olennaisin, ja se saattaa olla uusi munuaisen kehitykselle välttämättön induktori, joka ilmentyy Wolffin tiehyessä ja uretersilmussa. Plakofilin ilmentyy Wolffin tiehyessä sekä uretersilmussa epiteelien välisissä liitoksissa. Kondroitiini-sulfaatti proteoglykaani (CSPG) ilmentyy myös Wolffin tiehyessä sekä virtsanjohtimessa. Dixed-2 ja Mrlp2 ilmentyvät hiiren sikiökehityksen aikana koko munuaisessa ilman erityistä sijaintia.
  • Rautila, Osma (2021)
    Suomalainen perinnöllinen amyloidoosi on kromosomissa 9 vallitsevasti periytyvä systeeminen amyloidoosi, joka tunnetaan myös nimillä Meretojan ja Kymenlaakson tauti. Taudin kuvasi vuonna 1969 Jouko Meretoja, joka arveli potilaiden yhteisen esi-isän olevan lähtöisin 1300- luvulta Kymenlaaksosta. Taudin aiheuttaa pistemutaatio c.640G > A p.D187N gelsoliini-geenissä. Hiljattain osoitettiin SNP-siru genotyypitykseen perustuen, että suomalaisilla potilailla on todennäköisesti yhteinen esi-isä. Tutkimuksen tavoitteena on arvioida, kuinka monen sukupolven päässä sijaitsee suomalaisten gelsoliiniamyloidoosipotilaiden viimeisin yhteinen esi-isä. Toisena tavoitteena on arvioida uuden perustajahaplotyypin säilymiseen perustuvan iänmääritysmenetelmän toimivuutta. Verifioiduksi kontrollimenetelmäksi tämän rinnalle valittiin laajasti iänmääritykseen käytetty alleeliassosiaation hajoamiseen perustuva menetelmä geenin ympärillä sijaitsevia polymorfisia toistojaksoja hyödyntäen. Polymorfisiin toistojaksoihin perustuva menetelmä arvioi etäisyyden yhteiseen esi-isään olevan noin 31 sukupolvea eli noin 775 vuotta. Tämä ei ollut linjassa perustajahaplotyypin säilymiseen nojaavan menetelmän kanssa, joka arvioi etäisyyden yhteiseen esi-isään olevan noin 79 sukupolven päässä.
  • Saarentaus, Elmo (2017)
    Genetiska varianter har under senaste åren upptäckts påverka en myriad vanliga samt sällsynta sjukdomar. En viktig grupp varianter i neuropsykiatriska sjukdomar är kromosomavvikelser, speciellt förändringar i antalet genkopior (eng. ”copy number variations”, CNVs). CNVs är associerade med ett brett spektrum olika syndrom, som 22q11.2-deletionssyndrom, samt utvecklingsbetingade neuropsykiatriska sjukdomstillstånd och störningar, som intellektuell funktionsnedsättning, autismspektrets störningar, epilepsi, samt skitsofreni och andra psykotiska sjukdomar. För att undersöka CNVs associeration med neurologiska utvecklingssjukdomar analyserade vi CNVs i två olika kohorter: en kohort med utvecklingsstörda patienter som är värvda i Norra Finland (NFID); och FINRISK-populationskohorten. I en assocationsanalys efter att ha tagit kön, härstamning och genetisk varians (PCA) i beaktande, resulterande i 433 patienter och 1100 kontroller. Det upptäcktes CNVs som beaktades som högst sannolikt patogena i ca 5.3 % av patienter Den vanligaste typen av CNV var 22q11.2-deletionssyndrom (8 st); den vanligaste patogena kriterien var storlek (deletion på över 2 Mb). Associationsanalysens resultat visade en hög association med tidigare igenkända regioner och gener, med deletioner av storleken över 1 Mb fortfarande identifierade i populationen.
  • Oristo, Sini (2019)
    Objectives Autism generally refers to lingual, communicational and behavioral continuous traits, which are determined by genetics as well as environment. The purpose of this study was to examine to which extent the genetic autism risk explains the variation in autistic traits in two-year-old children in the normal population. Additionally the impact of the genetic autism risk was examined in conditions, where the mother of the child suffered from depressive symptoms during pregnancy and/or had alexithymia (trouble identifying feelings). Methods The sample was collected from the Child-Sleep cohort study (n=942). The child’s genetic autism risk was calculated by comparing the child’s genome with the genome of people with an autism diagnosis. All of the other information was collected with questionnaires. The child’s autistic traits were assessed according to the autism scale in BITSEA. The mother’s depressive symptoms during pregnancy were assessed according to the Ces-d (short) questionnaire and her trouble identifying feelings according to the TAS-20-questionnaire. The connections between the variables were examined with Pearson’s correlation coefficient. The autistic traits were examined with linear regression analysis. Results and conclusions The genetic autism risk explained 2% of the variation in the autistic traits of two-year-old children in the normal population. This result is in line with previous studies. Gender (autistic traits were more prevalent in males), maternal adolescence and the degree of maternal alexithymia were the best predictors of an autistic phenotype. Generally maternal maturity is considered a risk factor for the child’s more autistic phenotype, whereas our result possibly points out that the risk is rather created by paternal maturity instead. In addition of identifying the greatest risk factors, interactions between the genetic risk of autism and the psychological factors of the mother (depressive symptoms during pregnancy and trouble identifying emotions) were examined. However, these interactions were not statistically significant in this study. The impact of genes is already a verified fact – the next goal is to identify environments, where the genes interact, creating a more autistic phenotype.
  • Sánez Tähtisalo, Heini (2017)
    Sydän- ja verisuonisairauksien syntyyn vaikuttavat sekä ympäristötekijät että perimä. EKG kuvaa sydämen sähköistä toimintaa. Mitattaviin osiin jaetun EKG:n rinnalla sydänperäiseen äkkikuolleisuuteen vaikuttavien geenitekijöiden tunnistaminen mahdollistaisi riskipotilaiden tunnistamisen ennen vakavia sydänperäisiä häiriöitä sekä ennaltaehkäisevän lääketieteellisen hoidon kohdentamisen. Tässä kandidaattipolymorfismitutkimuksessa selvitettiin onko sydämen toimintaan osallistuvien beeta1 – ja beeta2 –adrenoreseptorien (ADRB1 ja ADRB2) tai angiotensiinikonvertaasientsyymin (ACE) geenien keskeisillä polymorfismeilla vaikutusta EKG:n piirteisiin. Potilasaineistona oli GENRES-tutkimukseen osallistuneet verenpainetautia sairastavat miehet (n=186). Polymorfismien vaikutusta QT-aikaan ja T-aallon muodostumiseen etsittiin nelivaiheisella lineaarisella regressiomallilla. Analyysien keskeisimpinä tuloksina havaittiin tilastollisesti merkitsevä ADRB1 Gly49 –alleelin QT-aikaa lyhentävä vaikutus ja ADRB1 Gly389 –alleelin QT-aikaa pidentävä vaikutus. ADRB2 Gly16Arg- ja Gln27Glu-vaihteluiden yhteys T-aallon muodostumiseen jäi olemattomaksi tai heikoksi. ACE I/D:n deleetio-polymorfismi viittaa tutkimuksen perusteella T-aallon muutoksiin, jotka ovat yhdistettävissä lisääntyneeseen äkilliseen sydänperäiseen kuolleisuuteen. Tämän tutkielman havainnot viittaavat siis useampiin mahdollisiin polymorfismien ja EKG-muuttujien välisiin yhteyksiin ja kannustavat tarkempiin jatkotutkimuksiin yhteyden kliinisen merkityksen arvioimiseksi.
  • Nakane, Elina (2018)
    Objectives. Maternal diabetes during the pregnancy increases the risk of pregnancy complications, but the effects of maternal diabetes on offspring cognition are less understood. Earlier studies have mainly associated the adverse effects of maternal diabetes with slight deficits in general cognitive and verbal functions in young children. Despite the earlier studies, it is unclear, does maternal diabetes per se affect cognitive development in children and adult offspring. The offspring with several developmental risks seem to be more prone to the adverse effects of maternal diabetes than offspring without the other concomitant risks. The aim of this study was to examine is maternal diabetes associated to lowered offspring general cognitive function in childhood and midlife, when the other concomitant perinatal risks occurred or either did not occur. A hypothesis was that maternal diabetes is associated to lowered general cognitive function only in children who had the other concomitant perinatal risks. Another aim was to explore is there a time related change in the risk groups. Methods. This study is a part of a prospective birth-cohort study originating in Helsinki region that follows 1971 to 1974 born risk group offspring. Out of 22,359 consecutive deliveries at the Institute of Midwifery during that time, 93 offspring had mother's diabetes obtained during the pregnancy or before it. Of the offspring with maternal diabetes, 59 had maternal diabetes as the only risk, and 34 had at least another predefined concomitant risk. General cognitive function in the subjects and controls was assessed by Wechsler Intelligence Scales at 9 and 40 years as a part of the wider neuropsychological examination. Differences between the groups were examined by group and pairwise comparisons. Longitudinal changes in general cognitive function in each group were estimated by fitting the linear multilevel models. Results and conclusions. Findings of the present study were controversial to the hypothesis. Both risk groups, with and without other concomitant risks, had lower general and verbal function in childhood than controls. At midlife, no effect of maternal diabetes was found. The results indicated that general cognitive function and acquired verbal information improved at least in the risk group with the other concomitant risks. Otherwise performance remained relatively same.
  • Pitkonen, Juho; Peteri, Ulla-Kaisa; Paavola, Jere; Kagistia, Hana Utami; Roybon, Laurent; Pouladi, Mahmoud A.; Maija L., Castren (2021)
    Astrosyytit ovat hermoston tukisoluja, joiden toiminnalliset ja morfologiset ominaisuudet vaihtelevat eri aivoalueilla. Astrosyyttien ominaisuuksien vaihtelun on todettu olevan erityisen suurta ihmisen aivoissa. Ihmisen pluripotentit kantasolut (hPS-solut) mahdollistavat astroglian monimuotoisuutta säätelevien mekanismien tutkimisen. Olemme luoneet menetelmän, joka tuottaa hPS-soluista ihmisen etuaivojen astrosyyttejä, ja kuvanneet tuotettujen astrosyyttien erityispiirteitä. Määritimme hPS-soluista erilaistettujen solujen geenien ilmentymisprofiilin päivänä 0 (D0), neuronaalisen induktion jälkeen D12 sekä solujen kasvutekijöillä monistamisen jälkeen D30 ja D60. Astrosyyttien lopullinen määräytyminen toteutettiin siliaarisella neurotrofisella tekijällä (ciliary neurotrophic factor; CNTF) ja D95-ikäisien astrosyyttien osoitettiin ilmentävän lähes 100 prosenttisesti yleisesti käytössä olevia astrosyyttimarkkereita. Erilaistamisen aikana tehty geeniprofilointi vahvisti solujen etuaivojen identiteetin. Kuvasimme solunsisäisen kalsiumkuvantamisen avulla, että erilaistamamme astrosyytit olivat elinkykyisiä ja antoivat toiminnallisia vasteita ATP:lle. Lisäksi määritimme astrosyyttien perustehtävää eli kykyä säädellä immuunivasteita aivoissa tutkimalla niistä erittyvien sytokiinien määriä. Totesimme D95-astrosyyttien viljelynesteessä merkittäviä pitoisuuksia MCP-1- ja TIMP-2-proteiinia yhteneväisesti näitä proteiineja ilmentävien geenien kohonneisiin mRNA-määriin. Astrosyyttien erilaistamismenetelmä oli toistettavissa usealla hPSC-linjalla, ja tutkimuksemme osoitti, että erilaistamamme etuaivojen astrosyytit tarjoavat uudenlaisen keinon sekä astrosyyttien soluspesifisten ominaisuuksien että yhteisviljelmissä muiden hermoston solujen kanssa hermoston solujen yhteisvaikutusten tutkimiseen. Potilaskohtaisista hPS-soluista erilaistettujen astrosyyttien avulla voidaan selvittää ihmisen astrosyyttien toimintaa myös sairaustiloissa.
  • Lapinsuo, Ella (2023)
    The extraembryonic placenta is composed of trophoblast cells consisting of the proliferative cytotrophoblasts (CTB) and its differentiated subtypes syncytiotrophoblast (SCT) and extravillous trophoblast (EVT). A normal trophoblast development is important as disruptions can lead to pregnancy complications such as pre-eclampsia. Therefore, it is crucial to investigate the underlying causes behind these abnormalities to discover treatments for patients suffering from pregnancy related disorders. Previously placental research was conducted largely on animal models and despite shared conservative pathways with humans, there are differences that exist. Only recently have researchers managed to successfully isolate and culture primary trophoblast stem cells (TSC)s by creating a TSC medium. Due to limited access to placental cells, pluripotent stem cells (PSC)s can be differentiated to TSCs by using the TSC medium. Naïve and primed states are described to be PSCs in different developmental stages, the former representing the pre-implantation state and the latter the post-implantation state. There lacks a consensus on whether both PSC states can be used to generate TSCs that correspond to primary trophoblasts. It has been argued that naïve cells possess more potential to differentiate into TSCs compared to the primed ones. The primed cells have been induced with the bone morphogenic protein (BMP) 4 to generate TSCs. This method is controversial as some suggest the induction resulting in other than TSCs, such as amniotic cells. Therefore, the aim of this thesis was to investigate whether both PSC states could be used to generate TSCs and its subtypes, if at all. Further, the effect of BMP4 was examined in the prime- derived differentiation protocol. The generated cells were then characterized and analyzed using imaging, immunocytochemistry (ICC) and quantitative reverse transcription PCR (RT-qPCR). The thesis found that although TSCs and its subtypes could be successfully generated from both PSC states, differences were observed. In addition to morphological differences, the most significant finding was the expression of the HLA-G gene, an EVT-specific marker, in the prime-derived TSCs (TSC(BMP4)). HLA-G was also significantly more expressed in the prime-derived EVTs (EVT(p)) compared to the naïve-derived EVTs (EVT(n)). Further, MMP2 which is also an EVT specific marker, was significantly more expressed in the EVT(n) compared to the EVT(p). As a result, the research question regarding the validity of the TSCs using both methods and the effect of BMP4 remains open. Further studies are required including single-cell RNA sequencing to obtain a better and broader view of the trophoblast profile and functional assays for subtype differentiation. Additionally, the role of BMP4 should be investigated in more depth.
  • Sandell, Katarin (2013)
    Unverricht-Lundborg disease (EPM1/ULD, OMIM 254800) is an autosomal recessive inherited severe type of epilepsy with myoclonus and progressive neurological degeneration. The incidence of EPM1 in Finland is 1:20.000 births per year, and there are about 200 diagnosed cases. The age of disease onset is between 6 and 16 years. The symptoms start with epileptic seizures, stimulus sensitive myoclonus, and generalized tonic-clonic seizures, and progress within a few years to ataxia, incoordination, and dysarthria. Fourteen EPM1-associated loss-of-function mutations in the gene cystatin B (CSTB) have been described. CSTB is a ubiquitously expressed intracellular cysteine proteinase inhibitor, counteracting i.e. cathepsins B, L, and K. The expression levels of CSTB are higher in cerebellar Purkinje cells and in Bergmann glia of the adult central nervous system. There is a Cstb-deficient mouse model for EPM1, which shows progressive death of neurons and widespread gliosis. It has been earlier shown that Cstb knockdown sensitizes cerebellar granule neurons to cathepsin B mediated oxidative stress, resulting in cell death. This master's thesis is based on a previously done gene expression profiling of primary microglia of Cstb-/- mice, which revealed a downregulation of type I and type II interferon-regulated genes on the Janus kinase (JAK)/Signal transducer and activator of transcription (STAT) –signaling pathway. The two aims of this study were to create an in vitro disease model for EPM1 in the human cervical adeno-carcinoma cell line HeLa, and in the murine leukemic cell line RAW264.7 by siRNA mediated RNA inhibition, and to study the effects of Cstb knockdown in selected interferon regulated genes of the JAK/STAT signaling pathway. Cystatin B was successfully knocked down in both cell lines HeLa and RAW264.7, and the obtained kinetics of Cstb knockdown in the cell line RAW264.7 provided with valuable information for the sec-ond part of the study. In the cell line HeLa, downregulation of CSTB did not change the expression lev-els of the genes of the JAK/STAT signaling pathway. In the cell line RAW264.7, CSTB knockdown on protein level was followed by a downregulation of the genes Stat1, Stat2, and Irf9. These results were in concordance with the results that had been obtained from the previously performed gene expression profiling of Cstb-/- microglia.
  • von Bagh, Anna (2022)
    Objectives. Motivational contexts exert a profound influence on behavior biasing actions in sometimes detrimental ways. In Pavlovian bias, reward-predicting conditioned cues elicit approach behavior while aversively associated cues elicit withdrawal, with capacity to impact instrumental goal-driven behavior. Similar bias has been suggested to be produced by instrumental learning. Motivational biases have been linked to dopaminergic system but the precise role of dopamine in their modulation is unclear. The present study investigated genetically driven variation in Pavlovian and instrumental learning biases by comparing task performance in subjects carrying different variants of two dopaminergic SNPs, COMT Val108/158Met and DRD2/ANKK1Taq1A. Associations with BMI, diet, age and gender were studied. All subjects were expected to show motivational bias while no direct hypotheses were made concerning genotypic or lifestyle-mediated effects due to exploratory nature of the study. Methods. 160 subjects completed a probabilistic Go/NoGo learning task in an experimental within-subject design. Generalized mixed-model logistic regressions were used to predict differences by genotype in Go responding with and without covariants. Differences by genotype in computationally modelled latent bias estimates were studied with linear regression. Results and Conclusions. Confirming expectations, an overall effect of motivational bias and a general bias towards active responding were found. Relative to Val/Met and A1+, carriers of COMT Val/Val and Taq1A A1- variants showed superior learning of correct Go responses, indicating enhanced instrumental bias. BMI was inversely associated with learning rate while diet, age and gender did not explain variance. Results partly contradict previous findings and highlight the mixed nature of research regarding associations between dopaminergic SNPs and motivational biases.
  • Arffman, Maare (2021)
    Uterine leiomyomas are common smooth muscle tumours, with a prevalence as high as 80%. Even though they are benign, they present severe symptoms such as heavy menstrual bleeding, pelvic pain and reproductive dysfunction. Uterine leiomyomas can be classified to conventional tumours and leiomyoma variants based on their histopathology. The tumours usually harbour one of the three driver alterations: MED12 mutations, HMGA2 overexpression or biallelic FH inactivation. Known risk factors for leiomyoma development are African ancestry, family history and age. Uterine leiomyomas are most typically treated by surgery, through either uterus preserving myomectomy or by definitive hysterectomy. This Master’s thesis is continuation of a study from Äyräväinen et al. 2020, a retrospective study of 234 patients undergoing myomectomy at Helsinki University Hospital during 2009-2014. The aim of this study was to analyse how many of these patients had developed recurrent leiomyomas and how often the tumours in subsequent operations were potentially clonally related. In addition, clinical characteristics associated with the operations were analysed. In total 18% of these patients had recurrent operations, leading to the screening of 77 individual uterine leiomyomas from 32 patients. The mutational statuses were studied systematically with molecular screening using Sanger sequencing and immunohistochemistry. Altogether 33 tumours from 21 patients were found to have identical mutational status with a tumour from the original study. Of these tumours, 14 had a MED12 mutation. All the MED12 mutations were found in exon two affecting either codons 44 or 36. Six tumours had HMGA2 overexpression, and eight tumours were FH deficient. Five tumours were triple negative for all studied alterations. Whereas 81% of the patients had had two removal operations, the rest of them had had three to five operations. The years between operations ranged from performing them on the same year to performing them ten years apart. Even though most of the recurrent tumours were sporadic, almost half (43%) of them had identical mutations, suggesting that though uterine leiomyomas usually arise independently, some might be clonally related. The mutational distribution was different in the recurrent tumours than in uterine leiomyomas in general, indicating that in addition to germline predisposition, the driver related characteristics might also contribute to the potential of recurrence and to the likelihood of developing clonal lesions. Tumours harbouring MED12 abnormalities were the least probable to be clonally related. The tumours showing identical HMGA2 overexpression were likely clonally related. The number of identical FH deficient ULs was high, but not unexpected, since all the patients harbouring the mutation in the recurrent tumours had HLRCC, and therefore having a predisposition. Most surprisingly, all patients with recurrent triple negative tumours had identical mutation statuses in the recurrent tumours, which points to previously unknown clonal development of these lesions. Most of the patients with more than two surgeries had recurrent mutations, suggesting that multiple surgeries might indicate the development of clonally related tumours. However, further research is required to confirm the clonal relationships and to investigate the pathological nature of the tumours with different driver alterations.
  • Vesanen, Kari (2016)
    Studies have shown that there is a familial risk in developing lymphomas. This thesis aimed to find candidate predisposing mutations for inherited non-Hodgkin lymphoma susceptibility in a Finnish pedigree. Exome sequences were available from two individuals in the pedigree, and common mutations were sought from exomes using bioinformatical tools. The validity and uniqueness of these common mutations were verified, and variation segregation was assessed by sequencing variation areas from all lymphoma patients in the pedigree. After filtering, 13 common variations were found, but due to variation's presence also in healthy control samples or the lack of segregation in the kindred, no candidate variation explaining non-Hodgkin lymphoma clustering in the pedigree was found. However, this study proved a group of mutations that probably do not need further studies as candidate variations for inheritable non-Hodgkin lymphoma. This study also provided rough comparison data for two different DNA sequence analysis programs.
  • Khamaiseh, Sara (2019)
    Uterine leiomyomas are common benign smooth muscle tumors. They are a major gynecological problem affecting women’s health and contribute to a significant burden on national health expenditure. They can be classified based on their histopathology into conventional, and histopathological variants. Most of the conventional tumors exclusively harbor one of the three drivers (MED12 mutations, HMGA2 overexpression, and biallelic FH inactivation). Based on the genetic background, histopathological subtypes differ from each other and from conventional leiomyomas. Although histopathological variants are considered benign, they share some resemblance to malignant uterine leiomyosarcomas. The overall aim of the thesis was to characterize the mutational landscape of histopathological leiomyoma variants using exome sequencing. The specific aims were, to identify new causative mutations in the histopathological variants and within subtypes, and to analyze pathogenic cancer census gene mutations within the variants. Exome sequencing was performed on 35 tumors representing variant histopathology (14 highly cellular, 12 bizarre nuclei, and 9 mitotically active tumors). The sequences were analyzed using BasePlayer software. Mutations were filtered through the designed pipeline using gnomAD, and COSMIC controls. Interesting findings were validated using Sanger sequencing. Exome data analysis of the highly cellular and bizarre nuclei tumors separately resulted in 10 and 17 different mutations in each subtype, respectively. They were found to be pathogenic by in silico predictions. Analysis of all histopathological variants including mitotically active tumors did not reveal any frequently mutated candidate genes. The tumors harbored somatic mutations in 98 genes related to cancer. A mutation in TP53 was found in one bizarre nuclei sample. Specific tumors harbored multiple cancer-related mutations indicating their malignant potential. The highly cellular tumors had the least frequent amount of causative mutations, indicating that the tumorigenesis mechanisms are probably other than missense mutations or small indels in exomes. Tumors with bizarre nuclei displayed a noticeably larger amount of possible pathogenic mutations, in both cancer census and exome analysis, suggesting possible cancerous tendency. This was also supported by the TP53 finding, a gene associated with uterine leiomyosarcomas. The histopathological subtypes pathogenesis is conceivably caused by larger genomic alterations, epigenetic variations or intronic mutations that remain to be found. Tumors with frequent cancer census mutations might harbor malignant potential. Understanding the etiology of these tumors is needed for better diagnostics and possible targeted treatments
  • Pohjolan-Pirhonen, Risto (2018)
    Introduction: Parkinson’s disease is the second most common neurodegenerative disease in the Western countries with a prevalence of about 0.3% in the population. Approximately 5 to 10% of patients are estimated to have a hereditary form of the disease. In recent years, 23 gene loci have been found, in which mutations cause hereditary Parkinson’s disease. In Finland, however, only a few disease linked gene variants have been found so far. Aims and methods: To find out if there are gene variants previously found in Parkinson’s disease patients in the Finnish population, we searched variants found in literature search in a novel genetic database, SISu, which contains genetic data of over 10 000 Finns. In addition, to confirm population findings and search for new gene variants, we analyzed 47 patient cohort with a designed gene panel and also another cohort, containing 147 patients, by minisequencing one variant found in the population data. Results: We found 16 variants in five different genes in the population data. Three of them were considered pathogenic and four likely benign after our analysis. In addition, we found nine potentially disease linked variants in eight different patients. Four of the variants were novel. Discussion: Finns seem to carry only few previously described gene variants in genes linked to Parkinson’s disease. It is likely that Finns carry their own unique variants, some of which we also found in our study. Our analysis brings valuable information about the still scarce knowledge of the genetics of this disease in the Finnish population. In addition, we were able to evaluate the disease risk of many variants further by studying their occurrence in Finns. The study of novel gene variants may bring valuable new information about the pathogenic processes related to the disease; especially the location of a novel variant in PARK2 gene found in our study turned out to be crucial for one of the previously suggested disease mechanisms.
  • Mäkitie, Sara (2016)
    Numerous genome-wide association studies (GWAS), GWAS meta-analyses and mouse studies have demonstrated that Wingless-related integration site 16 (WNT16) is associated with BMD, cortical bone thickness and strength as well as fracture risk. Practically no data exists regarding the significance of WNT16 in childhood-onset osteoporosis and fractures. Mutations and genetic variation in WNT16 were hypothesized to explain the clinical characteristics of some of the patients in question. Therefore, in this study the WNT16 gene was screened by Sanger sequencing in 46 pediatric patients with early-onset osteoporosis and in 60 pediatric patients with multiple fractures. We found altogether 12 variants in WNT16, of which one was a novel change. Inspite of the large amount of genetic variation found in WNT16, no actual mutations were found. None of the changes were statistically significant. It is likely that WNT16 mutations do not play an important role in the development of childhood osteoporosis.
  • Djupsjöbacka, Aurora (2017)
    Plötslig hjärtdöd är den vanligaste dödsorsaken i industriländerna. Kammarflimmer är en av de viktigaste orsakerna till plöstslig hjärtdöd. Hos 5-10 % av patienterna finner man ingen orsak till kammarflimret. Hos dessa patienter inleds en noggrann klinisk utredning där även gentester för genetiska rytmstörningssjukdomar spelar en mycket viktig roll. Då utredningen inte ger en förklaring till kammarflimret ställs diagnosen idiopatiskt kammarflimmer. Målet med vår studie var att med hjälp av exomsekvensering undersöka den genetiska bakgrunden till idiopatiskt kammarflimmer. I studien inkluderades 36 patienter hos vilka en förklaring till kammarflimret inte upptäcktes vid rutinmässiga kliniska undersökningar. Efter noggrann evaluering av varianterna i ljuset av släktanamnes och klinisk information om patienterna identifierades tre sannolikt patogena varianter och två varianter med okänd betydelse (VUS). Studien visar att vid exomsekvensering av patienter med idiopatiskt kammarflimmer kan avslöja en underliggande genetisk rytmstörningssjukdom hos en liten del av patienterna men hos majoriteten förblir orsaken till kammarflimret oklar.