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  • Mäenpää, Jenni (2020)
    Wines are treated to ensure their quality and preservation in the winemaking process. Treatments also have their drawbacks. Premium winemakers have often avoided filtration because it is supposed to cause a loss of taste. Sulfurization of wine is important, for example, for microbiological quality, but it is assumed to reduce the fruity aroma of wines. The purpose of the literature section was to investigate in general the effects of the wine-making process on the volatile compounds of wines. The interest was to find out what happens in winemaking and what compounds are formed at different stages of the process. The literature section also looked at volatile compounds, their analytics and SPME technology. The aim of the experimental part of the work was to develop a research method using headspace-solidphasemicroextraction-gaschromatography-massspectrometry (HS-SPME-GC-MS) technology and to find out the aroma composition and possible differences of the receiving sample and the bag-in box (BIB) -packaged wine. Indicator compounds for volatile compounds were determined from Chardonnay and Cabernet Sauvignon wines using the HS-SPME-GC-MS method developed for the study of Cabernet Sauvignon wine. In the optimization of the method, the functionality of SPME fibers, the GC temperature program and the sample preparation were studied. Receipt, tank, and BIB packaging samples were collected for examination of the wines. The samples were analyzed by HS-SPME-GC-MS and the results were processed by principal component analysis (PCA) as well as other statistical methods. Receipt and BIB packaging samples from Cabernet Sauvignon wine were not divided into clear groups based on PCA. The model best describing the changes in the compounds was achieved with the profile of volatile compounds: ethyl acetate, 1-propanol, isoamyl alcohol, 2-methylbutanol, butanoic acid ethyl ester, isoamyl acetate, hexanol, hexanoic acid, octanoic acid ethyl ester and octanoic acid. In Cabernet Sauvignon wine, almost all the amounts of volatile compounds remained fairly constant as the process progressed. In 1-propanol, ethyl ester of butanoic acid and ethyl ester of octanoic acid, a decrease in the amount was observed between the receipt sample and the BIB packaging sample. In contrast, the amount of 2-methylbutanol and octanoic acid increased when receiving and BIB packaging samples were compared. Receipt and BIB packaging samples of Chardonnay wine were distinguished by PCA. The model best describing the changes in the compounds was achieved with the profile of volatile compounds: ethyl acetate, isoamyl alcohol, 3-methylbutanol, 2-methylbutanol, butanoic acid ethyl ester, isoamyl acetate, hexanol, hexanoic acid, benzene alcohol, octanoic acid ethyl ester, octanoic acid ethyl ester, octanoic acid ethyl ester. The amounts of volatile compounds studied in Chardonnay wine remained fairly constant. Octanoic acid ethyl ester, benzyl alcohol and decanoic acid decreased as the process. The results of the study show that the wine processing process affects the flavorings of Cabernet Sauvignon and Chardonnay wine. The HS-SPME-GC-MS method showed a reduction in several compounds, but previous studies have shown that this change has not been detected by sensory evaluation.
  • Korhonen, Ida (2023)
    Väestönkasvu lisää tarvetta öljykasvien tuotannolle ihmisravinnoksi ja biopolttoaineeksi. Öljynpuristamisesta saatavat sivutuotteet, kuten rouheet ja puristeet sisältävät hyvälaatuista valkuaista eläinten ruokintaan. Camelina (Camelina sativa) ja hamppu (Cannabis sativa) ovat potentiaalisia vaihtoehtoja nautojen valkuaisruokinnassa. Tutkimuksen tavoitteena oli selvittää camelina- ja hamppupuristeen vaikutusta in vitro pötsikäymiseen eri karkearehukäsittelyillä. Karkearehuina käytettiin lämpökuivattua nurmi-, puna-apila- ja maissisäilörehua ja väkirehuna ohraa. Kontrollina toimivat rypsipuriste ja käsittelyt, jotka eivät sisältäneet täydennysvalkuaisrehua eli koostuivat ainoastaan karkearehusta ja ohrasta. Kaikkien käsittelyiden karkearehu:väkirehusuhde oli 1:1 kuiva-aineessa. Valkuaislisättömien käsittelyiden raakavalkuaispitoisuudet vaihtelivat 95–140 g/kg ka välillä riippuen käytetyn karkearehun raakavalkuaispitoisuudesta. Valkuaiskäsittelyissä raakavalkuaispitoisuudeksi tuli 170 g/kg ka. Inkubaatiopulloihin punnittiin rehuja yhteensä 3,5 g ka. Käsittelyitä oli 12 kpl ja lisäksi jokaisessa ajossa oli 2 kpl blancoja, joihin ei punnittu rehuja. Ajoja tehtiin neljä. Jokainen ajo kesti 30 h ja näytteitä otettiin 1, 4, 8, 12, 24 ja 30 h kuluttua inkubaation aloituksesta. Näytteistä määritettiin haihtuvat rasvahapot (VFA), ammoniumtyppi ja pH. Analyysituloksista laskettiin haihtuvien rasvahappojen moolisuhteet. Tutkittavista rehuista analysoitiin lisäksi sekundäärinen kuiva-aine, tuhka, tuhkaton neutraalidetergenttikuitu (NDF), raakavalkuainen ja kokonaisrasva. Valkuaisrehuista analysoitiin typpifraktiot (A, B1, B2, B3 ja C). Rypsi-, camelina- ja hamppupuristeen raakavalkuaispitoisuudet olivat 332, 367 ja 286 g/kg ka vastaavasti. Hypoteesin vastaisesti valkuaisrehun lisääminen ei lisännyt VFA:n kokonaismäärää ja ammoniumtypen muodostusta. Hypoteesin mukaisesti valkuaisrehun lähde vaikutti pötsikäymisen voimakkuuteen. Camelina- ja rypsipuristetta sisältävät käsittelyt vastasivat toisiaan VFA:n kokonaismäärässä (P>0,05) hypoteesin mukaisesti. Camelina lisäsi kuitenkin propionihapon kokonaismäärää (P<0,05) ja mooliosuutta (P<0,01) verrattuna rypsiin sekä pienensi voihapon mooliosuutta verrattuna rypsiin (P<0,01). Hamppupuristeella VFA:n kokonaismäärä oli pienempi kuin camelinapuristeella (P<0,05) ja suuntaa antavasti pienempi kuin rypsipuristeella (P=0,063). Hamppupuriste vähensi propionihapon kokonaismäärää ja lisäsi etikkahapon mooliosuutta verrattuna rypsiin (P<0,001 ja P<0,01, vastaavasti) ja camelinaan (P<0,001 ja P<0,01, vastaavasti). Karkearehun lähde vaikutti VFA:n kokonaismääriin ja moolisuhteisiin. Puna-apilasäilörehua sisältävissä käsittelyissä VFA:n kokonaismäärät olivat suuremmat kuin maissisäilörehua sisältävissä käsittelyissä (P<0,05). Puna-apilasäilörehukäsittely lisäsi etikkahapon ja propionihapon kokonaismääriä verrattuna nurmisäilörehukäsittelyihin (P<0,05 ja P<0,01 vastaavasti) ja maissisäilörehukäsittelyihin (P<0,01 ja P<0,05, vastaavasti). Tulosten perusteella camelinapuristeen raakavalkuaispitoisuus oli rypsiä suurempi ja näiden VFA:n kokonaismäärät ja typpifraktiot vastasivat toisiaan. Camelina voisi siis vastata rypsiä nautojen valkuaisruokinnassa, mutta hampun valkuaisarvo on mahdollisesti näitä alhaisempi VFA:n kokonaismäärän ja moolisuhteiden perusteella. Hamppupuristeen suurempi NDF-kuidun määrä voisi selittää camelina- ja rypsipuristekäsittelyitä suuremman etikkahapon mooliosuuden. Karkearehun lähde vaikutti pötsikäymiseen ja puna-apila lisäsi VFA:n kokonaismäärää verrattuna nurmi- ja maissisäilörehuun, jolla voi olla positiivisia vaikutuksia energiansaantiin ja maitotuotokseen.
  • Varis, Maiju (2022)
    Suomessa on tarvetta uusille kotimaisille valkuaislähteille. Öljyntuotannosta ylijäävä camelinapuriste vastaa aminohappokoostumukseltaan melko hyvin lypsykarjan ruokinnassa yleisesti käytettyä ryp-siä, joten se voisi sopia hyvin valkuaisrehuksi. Camelina ei tarvitse paljon ravinteita ja sitä pystytään kasvattamaan monenlaisissa ilmasto-oloissa, koska se kestää hyvin vaikeita ympäristöoloja, kuten kuivuutta, sekä tauteja ja tuholaisia. Tutkimuksen tavoitteena oli tutkia camelinan soveltuvuutta valkuaisrehuksi lypsylehmillä. Tutkimus koostui kahdesta osakokeesta, joissa mitattiin ohutsuoleen virtaavan käyttökelpoisen valkuaisen määrää in vitro. Osakokeessa 1 verrattiin kahta eri camelinalajiketta rypsiin ja osakokeen 2 koe-dieetti sisälsi camelinaa nousevina tasoina siten, että camelinavalkuainen korvasi rypsivalkuaista 0, 1/3, 2/3 ja 3/3. Hypoteesi oli, että camelina voi korvata rypsin täysin ilman ohutsuoleen virtaavan käyttökelpoisen valkuaisen määrän vähenemistä. Tutkimuksessa koerehuista analysoitiin perusanalyysien lisäksi aminohappokoostumus ja Cornellin typpifraktiot. Typpifraktioiden perusteella camelinalla ja rypsillä on samankaltainen hajoavuuspoten-tiaali pötsissä. Ohutsuoleen virtaavan käyttökelpoisen valkuaisen määrää mitattiin laboratoriossa Bioprocess control’in Gas Endeavor in vitro –laitteella inkuboimalla rehuja naudan pötsinesteessä. Osakokeiden tulokset olivat keskenään ristiriitaisia. Osakoe 1:n mukaan ohutsuoleen virtaavan käyt-tökelpoisen valkuaisen määrässä ei ollut merkittäviä eroja valkuaisrehujen välillä. Osakoe 2:ssa ohutsuoleen virtaavan käyttökelpoisen valkuaisen määrä yllättäen väheni camelinan annostasoa nostettaessa. Tässä tutkimuksessa hypoteesi ei toteutunut kaikkien tulosten osalta, mutta sekä osakoe 1:n että typpifraktioiden mukaan camelinan pitäisi soveltua rypsin korvaajaksi valkuaisrehu-na. On epäselvää, miksi osakoe 2:ssa tämä ei toteutunut. Tulevaisuudessa tarvitaan lisää tutkimuk-sia camelinan soveltuvuudesta valkuaisrehuksi, ja in vitro -menetelmä on hyvä tutkimuskeino ennen in vivo -kokeita.
  • Mihailov, Heta (2023)
    Nykyään kuluttajat ovat entistä kiinnostuneempia elintarvikkeiden laadusta ja niiden terveellisyydestä. Eläinperäisten tuotteiden koostumukseen voidaan vaikuttaa eläimille syötettävän rehun kautta. Suomessa täydennysvalkuaisrehun omavaraisuusaste on heikko, 20,9 % vuonna 2021, joten siihen kaivataan uusia vaihtoehtoja rypsin ja rapsin rinnalle. Tässä tutkielmassa tutkittiin camelinan ja hampun soveltuvuutta kotieläinten ruokintaan täydennysvalkuaisrehuna, koska niiden siemenet sisältävät runsaasti valkuaista ja rasvaa. Aineiston siemennäytteet kerättiin camelinaa (n=5) ja hamppua (n=20) viljelyttäviltä yrityksiltä (Janakkalan piensiemen ja TransFarm), näytteet olivat kasvukaudelta 2021. Hampusta analysoitavat siemennäytteet valittiin siten, että niissä on mukana sekä suuren sadon (>600 kg/ha) että pienen sadon (<400 kg/ha) näytteitä ja että ne ovat maantieteellisesti mahdollisimman edustavia. Näytteistä analysoitiin peruskoostumus; kuiva-aine, kokonaisrasva, raakavalkuainen, tuhka ja neutraalidetergenttikuitu (NDF). Lisäksi haitta-aineista analysoitiin glukosinolaatit camelinasta ja trypsiini-inhibiittorit camelinasta ja hampusta. Hampusta kerättiin viljelytietoja kyselyllä, jonka TransFarm oy toteutti sopimusviljelijöilleen kasvukausilla 2021 (n= 61 kpl) ja 2022 (n=59 kpl), vastauksia saatiin yhteensä 120 kpl. Tilastollisia yhteyksiä hampusta selvitettiin SAS-tilasto ohjelmalla ristiintaulukoinnin, varianssianalyysin ja korrelaatioanalyysin avulla. Tilastoanalyyseja ei tehty camelinan koostumuksesta havaintojen pienestä määrästä johtuen. Tulosten mukaan hampun satotasoon vaikuttivat kasvuston korkeus, puintikosteus, taimettuneiden yksilöiden määrä ja tuotantomuoto. Mitä korkeampi kasvusto (P<0,001) ja mitä suurempi puintikosteus (P<0,05), sitä suurempi osuus havainnoista sijoittui suurimpaan satotasoluokkaan (>600 kg/ha). Lisäksi suuntaa-antavasti (P<0,10) taimettuneiden yksilöiden määrän (kpl/m2 ) lisääntyessä suurempi osuus havainnoista sijoittui suurimpaan satotasoluokkaan. Hypoteesin vastaisesti typpilannoitustasolla ja maan fosforiluokalla ei havaittu olevan yhteyttä hampun satotasoon (P>0,10). Luomutuotannossa suurempi osuus havainnoista sijoittui pienimpään satotasoluokkaan (P<0,05) ja suuntaa-antavasti matalampaan kasvuston korkeusluokkaan (P<0,10) kuin tavanomaisessa tuotannossa. Ristiintaulukoinnissa (n=120) ei havaittu yhteyttä tuotantomuodon ja kasvuajan välillä, varianssianalyysissä (n=20) luomutuotannossa oli lyhyempi kasvuaika kuin tavanomaisessa tuotannossa (P<0,05) Kokonaisrasvapitoisuudet olivat camelinan siemenissä 375– 410 g/kg ka, hampun siemenissä rasvapitoisuudet olivat suurempia pienemmän satotason siemenissä, kuin suuremman satotason siemenissä, (P<0,001; 365 vs. 339 g/kg ka). Raakavalkuaispitoisuus camelinan siemenellä oli 267–303 g/kg ka ja hampun siemenellä 275–277 g/kg ka, satotaso ei vaikuttanut hampun raakavalkuaispitoisuuteen (P>0,10). Tuhkapitoisuus oli camelinalla 33,7-40,5 g/kg ka ja hampun siemenellä 56,8-59,3 g/kg ka, satotaso vaikutti suuntaa antavasti hampun tuhkapitoisuuteen (P<0,10) ollen korkeampi pienemmän satotason siemenissä verrattuna suuremman sadon siemeniin (59,3 vs. 56,8 g/kg ka). Camelinan siementen glukosinolaattipitoisuudet olivat 15,7–26,3 mmol/kg ka ja trypsiini-inhibiittoriaktiivisuus (TIA) 15,0- 22,2 mg ka. Hamppunäytteiden TIA-pitoisuudet olivat suuntaa-antavasti korkeammat suuremman sadon siemenissä verrattuna pienemmän sadon siemeniin (P<0,10; 4,29 vs. 4,07 TIA/ mg ka). Tulosten perusteella camelinan ja hampun siementen koostumuksessa esiintyy vaihtelua, johon hampun osalta vaikuttaa satotaso. Hampun satotasoon voidaan vaikuttaa viljelykäytännöin. Camelina ja hamppu soveltuvat siemenen koostumuksen, glukosinolaattipitoisuuden ja trypsiini inhibiittoriaktiivisuuden perusteella täydennysvalkuaisrehuna osaksi kotieläinten ruokintaa
  • Salomaa, Sini (2014)
    The aim of this study was to investigate the effects of graded amounts of camelina oil on milk fatty acid composition in lactating cows fed diets based on a mixture of grass and red clover silages. The experiment was carried out at the University of Helsinki research farm in Viikki 30th January 2009 – 23th April 2009. Eight multiparous Finnish Ayrshire cows participated in this experiment and four of them were rumen fistulated. Experimental design used was 4 x 4 Latin square. Treatments consisted of concentrate supplements containing various levels of camelina oil (0%, 2%, 4% and 6% on air-dry basis). All concentrates contained camelina expeller (20% on air-dry basis). The cows were offered daily 12 kg of experimental concentrate and silage ad libitum. The experimental periods lasted for 21 days. The first 14 days were adaptation period and the last 7 days formed sampling period. Increase of camelina oil level in the diet linearly decreased forage and whole diet dry matter intake (P?0,002). Camelina oil level did not affect organic matter, NDF and nitrogen whole-tract digestibility (P>0,10). Milk yield and milk protein- and lactose content linearly decreased when camelina oil level increased (P<0,001). Camelina oil level did not affect milk fat yield (P>0,100). Milk fat content (P=0,014) linearly increased and protein content (P=0,032) and urea content (P<0,001) linearly decreased when camelina oil level increased. Camelina oil level did not affect milk lactose content (P>0,100). Increase of camelina oil level linearly worsened milk taste panel scores (P=0,018). Camelina oil level did not affect plasma metabolite concentrations except that of total free fatty acids that linearly increased with camelina oil supplementation (P<0,001). Effects of camelina oil supplementation on rumen pH and rumen fermentation pattern were numerically negligible. Increase of camelina oil level linearly decreased the concentration of saturated fatty acids in milk fat (P<0,001) and linearly increased those of monounsaturated (P<0,001) and polyunsaturated (P<0,002) fatty acids. Increase of camelina oil level linearly decreased the content of mammary de novo synthesised short- and medium-chain 6-14-carbon fatty acid in milk fat (P?0,028). Camelina oil level had no effect on alphalinolenic acid content in milk fat (P>0.100). Increase of camelina oil level linearly increased trans fatty acids and CLA content in milk fat (P?0,008). Camelina oil supplementation did not affect neither the milk fat content of the final product of ruminal biohydrogenation of 18-carbon unsaturates stearic acid nor that of oleic acid (P>0,10). This is possibly due to biohydrogenation not proceeding to the end, ceasing to the last step before stearic acid. Milk fat trans-11 18:1 and cis-9, trans-11 CLA contents linearly increased at remarkably high levels when camelina oil level in the diet increased (P?0,008). This is possibly due to incomplete ruminal biohydrogenation of 18-carbon unsaturated fatty acids. Camelina oil supplement improved milk fat composition by decreasing saturated and increasing the trans-11 18:1 and cis-9,trans-11 CLA content in milk. However, giving camelina oil at high levels decreased silage and whole diet dry matter intake and affected milk production negatively.
  • Suominen, Pauliina (2015)
    Porkkana on sekä tuotannollisesti että kotitalouksien kulutuksen kannalta merkittävin avomaanvihannes Suomessa. Porkkanan merkittävin tuholainen on porkkanakemppi (Trioza apicalis), jonka havaittiin vuonna 2009 toimivan myös porkkanaa infektoivan Candidatus Liberibacter solanacearum (CLs) -bakteerin levittäjänä. Merkittävimmät porkkananviljelyalueet sijaitsevat Lounais-Suomessa, joka on myös erityisen kemppiongelmaista aluetta. Alueella on havaittu myös runsaasti CLs-bakteerin aiheuttamaa voimakkaan punaista värittymisoiretta porkkanan lehdissä. Tämän tutkimuksen tavoitteena oli kartoittaa CLs-bakteeritaudin esiintyvyys Lounais-Suomen porkkanaviljelmillä ja määrittää CLs-positiivisten porkkanoiden osuudet eri oireryhmissä: oireettomat, kempinsyömät ja kempinsyömät värittymisoireiset. Tutkimuksen aikana pyrittiin kehittämään edullinen ja toimintavarma PCR-menetelmä CLs-bakteerin laajamittaiseen diagnostiikkaan soveltuvaksi. Lisäksi tutkimuksessa haluttiin tarkastella porkkanakemppien määrien vaihtelua lähekkäisillä porkkanapelloilla Kanta-Hämeessä. Tämän tutkielman CLs-kartoitus oli osa Maa -ja metsätalousministeriön rahoittamaa hanketta kartoittaa taudin levinneisyys Suomessa. Elintarviketurvallisuusviraston näytteeksi keräämät porkkanakasvit käsiteltiin Helsingin yliopiston kasvipatologian laboratoriossa, jossa näytteistä eristettiin DNA:ta ja tehtiin PCR-testit CLs-bakteerin toteamiseksi. Geelissä elektroforeesilla erotellut PCR-tuotteet kuvattiin UV-valossa ja CLs-positiiviset todennettiin vertaamalla PCR-tuotetta molekyylipainostandardiin ja positiiviseen kontrolliin. Toimintavarmimmaksi PCR-menetelmäksi osoittautui kuumassa lämpötilassa toimiva entsyymi ja lyhyt PCR-ohjelma. Kartoitustulokset osoittivat, että tautia esiintyy Lounais-Suomessa runsaasti, sillä suurin osa värittymisoireisista porkkanoista todettiin CLs-positiivisiksi. Sekä taudin että kemppien määrä osoittautui olevan Lounais-Suomessa suurempi kuin vertailualueilla Itä-Suomessa ja Pohjanmaalla. Kemppien määrissä läheisillä pelloilla havaittiin suurta vaihtelevuutta. Tällä hetkellä ainoa keino torjua CLs-bakteeritautia on keskittyä kemppien torjuntaan. Kemppipopulaatiot ovat kuitenkin tulleet viime vuosina kestävämmiksi yleisesti käytetyille torjunta-aineille, mikä luo uusia leviämismahdollisuuksia myös CLs-bakteerille.
  • Wickström, Annika (2020)
    'Candidatus Liberibacter solanacearum' (CLso) is a frequent bacterium in carrot in southern and western Finland but is also occurring in South Savonia. The bacterium is unculturable, lives as a parasite and multiplies in the phloem vessels and is transmitted by the carrot psyllid Trioza apicalis. In Spain, France and Finland the bacterium has also been found in parsnip. The aim of this thesis was to study the occurrence and genetic variation of this bacterium in carrot and parsnip in Satakunda, Southwest Finland and South Savonia from such parsnip and carrot fields where psyllids and discolouration symptoms in foliage have been detected. All the samples were collected based on foliar discolouration symptoms. Four wild plants from the family Polygonaceae were collected from one carrot field and one parsnip field in Satakunda. These plants showed similar foliar discolouration as the carrots. Other criteria for collecting the carrot samples was based on occurrence of psyllids and leaf curling. Samples of parsnips were collected from vegetable farms, where parsnips were grown nearby the carrot fields and where psyllids had been detected. The samples were analysed by real-time PCR with primer combination specific to CLso. Those samples that had high amounts of bacteria were chosen for sequencing and detection of haplotype. CLso was detected in 62,9 % of the carrot samples, in 90,8 % of the parsnip foliage samples and in 76,9 % of the parsnip root samples and in all the samples of symptomatic wild plants. Based on the ftsZ gene sequence, a new haplotype of CLso, named haplotype H, was identified in three of the parsnip samples from Satakunda and in two samples of pale persicaria (Persicaria lapathifolia (L.) Gray). This is the ninth haplotype of CLso identified.
  • Lukkarinen, Vaula (2014)
    Northern white cedar (Thuja occidentalis L.) (NWC) swamps are valuable both commercially and ecologically. Unfortunately, many NWC swamps are degraded and information about them is not abundant. Especially there have been no definitive studies about mosses in northern white cedar swamps and how they react to disturbances. Mosses are sensitive to changes in their environment and thus they could be used to assess ecosystem conditions of NWC swamps. The objective of this study was to determine if mosses could be used to asses conditions in NWC swamps and if there are differences between moss communities in disturbed and undisturbed sites. Seventeen sample plots were taken from 12 disturbed and undisturbed sites around upper Michigan and northern Minnesota in the summer of 2012. All mosses occurring on the plots were identified and several associated environmental parameters were measured. The main environmental conditions affecting moss communities were identified with non-metric multidimensional scaling (NMS). Multiple response permutation procedures (MRPP) were run to ascertain if there were significant differences in community composition between disturbances. Indicator species analysis was then done to identify species that are related to different types of disturbances. A one-way ANOVA was used to check for significant differences between species richness and moss cover of undisturbed and disturbed sites. Over all sixty-two moss species were identified. The results indicate that there was no significant difference in species richness or moss cover between disturbed and undisturbed sites. However, moss community composition was affected by disturbance and strongly divided by a wetness gradient. Dicranum fuscescens was found to indicate undisturbed conditions. Calliergon cordifolium and Climacium dendroides indicated disturbed sites with wet conditions. Brotherella recurvans and Eurhynchium pulchellum indicated swamps with other disturbances.
  • Gaudel, Rabins (2019)
    Canopy gaps and their characteristic features (e.g. area and shape) influence the availability of nutrients, moisture and light in a forest ecosystem, and consequently affect the regeneration process and species composition in the forest. Most of the earlier research on canopy gap used field measurement and conventional remote sensing to quantify gap and these methods have limitations and accuracy problems. However, the development in Light Detecting and Ranging (LiDAR) technology has been effective in overcoming limitations and challenges associated with conventional remote sensing. The ability of LiDAR to represent the three-dimensional structure of the canopies and the sub-canopy resulting in high-resolution topographic maps, highly accurate estimated of vegetation height, cover and canopy structure makes it suitable technology for gap studies. LiDAR-based digital surface model (DSM) and digital elevation model (DEM) were used to quantify the canopy gaps over 5124ha of University of Tokyo Chichibu Forests (UTCF) consisting of three forest-types; primary, secondary and plantation forest. Disturbance driven canopy gaps might have spatial and characteristic variation due to differences in disturbance history, nature, frequency and intensity in different forest and land-types. Quantifying gap characteristics and studying variation and size distribution in different forest types and topography help to understand the different gap dynamics and their ecological perspectives. In this study, a gap was defined as an opening with a maximum height of 2m and minimum area threshold of 10m2. The minimum area threshold, which represents the gap area created by the death of at least a single tree, was determined through a random sampling of 100 tree crowns at UTCF using high resolution aerial photographs. Gap size distribution was analyzed in different forest types and land types. Spatial autocorrelation of gap occurrence was studied using semivariance analysis and distance to the nearest gap (DNG), which is the distance to the nearest gap for an individual gap. Canopy gap size frequency distribution in different forest-types was investigated using power-law. The negative exponent (α), which is also the scaling component of the power-law distribution, was compared between forest-types. Altogether, 6179 gaps with area 10-11603 m2 were found. Gap size distribution in UTCF showed skewness with a high frequency of smaller gaps and a few large gaps. Half of the gaps were smaller than 19 m2 and less than one percent of gaps (0.73 %) were larger than 400 m2. Primary forest contained high gap density (1.85 gaps per ha), shortest mean-DNG (22m) and second-largest gap-area fraction (0.72 %) after plantation forest area (0.76 %). Secondary forest had the lowest gap density (1.03 gaps per hectare) but had the larger mean gap-area (43 m2) than in primary forest (39 m2). The Kolmogorov–Smirnov test showed differences (p<0.05) in gap size distribution between primary and secondary forest. However, the gap size distribution in primary forest show similarity (p=0.59) with plantation forest area. In primary and plantation forest there was a high frequency of small gaps and few very large gaps (2000-10500 m2), whereas very large gaps (>2400 m2) were absent in the secondary forest. Gap size frequency distribution followed a power-law distribution only in plantation forest area (p>0.1, α =2.27). The scaling parameter in the primary and secondary forest was 2.56 (p=0.01) and 2.20 (p=0.02), respectively. Gap distribution showed some spatial autocorrelation in primary and secondary forest at least with distance up to 1300m. Most of the gaps in the primary forest were concentrated in the valley and middle slope, whereas the upper and middle slope had fewest gaps.
  • Weaver, Sally (2020)
    In this thesis the changed paradigm of international climate policy from negotiated top-down targets of the Kyoto era to the new, Paris Agreement bottom-up mitigation contributions, NDCs is introduced. NDCs are submitted to the UNFCCC on the basis of what countries consider as their fair share of efforts in line with global warming targets, equity considerations and national circumstances. This means that normative decisions on fairness need to be made when selecting a long-term target required by the Paris Agreement. For this purpose, a framework was developed for considering some of the key issues that emerge in examining long-term climate policy. Different equity measures exist for assessing fairness, of which Equality, Ability to Pay and Historic Responsibility were selected as the ones to consider, since they are the most unambiguous as formulas and are the most prevalent in carbon budget allocation studies. The Paris Agreement temperature targets can be calculated into carbon budgets, of which the most recent IPCC estimation for the 1.5 degree budget was selected and subsequent global emissions subtracted from. To be able to consider all sources and sinks of GHGs, the carbon budgets are applied GHG budgets instead of purely carbon budgets and all emissions and sinks reported in national GHG inventories are included, which are reported in line with IPCC 2006 guidelines. While not a completely accurate utilisation of the carbon budget, this approach is sufficient for examining climate policy ambition. The equity calculations for allocating the GHG budget to countries for the period of 2020-2050 produced an emissions reduction pathway while the land-use sector net sink was kept fixed according to the historical average with an illustrative pathway for required additional emissions removals. These results were presented in graphs, and key figures pointed out, such as the mitigation rate, the year GHG neutrality occurs, what the 2050 end result is as a reduction of emissions compared to 1990, and at what rate emissions removals are required to increase. The goal of suggesting a long-term climate policy target in line with climate science, equity and 1.5 global carbon budget was successful in part; all the set conditions were successfully applied and a calculation alongside a demonstrative graph with specific key targets was produced. However, some of the results were unrealistic for applying to real life conditions, such as the amount of emissions removals required in some cases. Mitigation rates, which were fixed as linear, were very drastic in some cases, which might not be possible in present conditions. Contrary to what initially was set out to discover, GHG neutrality targets to be achieved in the 2030s for most cases transpire as the most significant result. GHG neutrality is however only a milestone toward a long-term target, which based on these case studies is a significantly over 100% emissions reduction target.
  • Aarinen, Sarita (2022)
    Current climate change is based on growth of greenhouse gas emissions, which are mainly due to human activities. Activities related to the global food system are responsible for about fourth of the global greenhouse gas emissions. Thereby, the emissions of the food system, which are related to the products that it provides, should be decreased. Greenhouse gas emissions of products can be estimated and communicated by the indicator of carbon footprint, whereas reduced greenhouse gas emissions of the products’ users, resulting from the emission improvements related to the products, can be presented by the carbon handprint. The aim of this master thesis was to calculate the carbon footprint of a Finnish food business’ meat containing food product. In addition, the food product’s meat component was replaced with different meat alternatives in order to assess the carbon handprints, and to compare the carbon footprint and carbon handprint as information providers of climate impacts. The main method used in this thesis was life cycle assessment, while methodology of carbon handprint was used as an additional method. Life cycle assessment was used to assess the carbon footprint, and it was applied according to the ISO standards of 14040 and 14044. Primary data for the study was collected from the Finnish food business through interviews by phone and e-mail, while secondary data was gathered from different sources. The actual calculation process of the carbon footprint and carbon handprints were executed by using Excel. The carbon footprint of the studied food product was found to be 1,20 kgCO2eq/one packaged food product, while the handprints based on the meat alternatives were found to be 0,27-0,39 kgCO2eq/one packaged product. Carbon footprint and handprint were found to be different as communication tools of climate impacts. In addition, they were discovered to have their advantages and limitations depending on the chosen point of view.
  • Simola, Noora (2018)
    Tiivistelmä – Abstrakt – Abstract Over the recent decades Vietnam has implemented extensive reforestation and afforestation programs that have turned the country’s forestry sector’s net carbon balance positive. Smallholder forestry has contributed to this positive trend as individual farmers, households, and cooperatives have regreened degraded lands with fast-growing exotics such as Acacia hybrid. The purpose of the study was to estimate the carbon stocks and sequestration potential of smallholder Acacia hybrid plantations in Thuy Phu, Hue, Vietnam, where the short rotation plantations have been established on the government allocated barren lands. The effect of afforestation on these stocks was studied through quantification of the mean ecosystem carbon and sub-stocks of both acacia holdings and barren lands. Additionally, the impact of stand age and planting density on these stocks was studied. The carbon stocks of Acacia hybrid plantations were quantified using methods of forest inventory and soil sampling. The barren lands results were obtained from sites proxy to the land use prior to afforestation. Allometric equations, modelling, statistical analysis, and root:shoot ratios were used to estimate the mean vegetation stocks. The biomass results were converted to carbon and the soil samples were analyzed in laboratory for the soil organic matter content. The sequestration of short rotation plantation was quantified using estimates of time-averaged carbon stocks and the stock difference-method. The smallholder Acacia hybrid plantations were found to have prominently higher ecosystem carbon stocks than the barren lands due to gains in tree biomass sub-stocks. Afforestation had no statistically significant impact on the soil organic carbon or ground vegetation stocks. The impact of planting density on the carbon stocks was found to be marginal. The mean ecosystem carbon in the plantations of Thuy Phu was 67.27 t C ha-1, including the sub-stocks of aboveground trees 24.38, ground vegetation 0.23 ±0.08, tree roots 5.36, ground vegetation roots 0.18 and soil 37.13±8.17 t C ha-1. The time-averaged ecosystem carbon stock of 5 years rotation was 65.23 t C ha-1. The mean barren land ecosystem carbon was 37.40, including the sub-stocks of aboveground vegetation 0.15 ±0.11 t C ha-1, belowground vegetation 0.12, and soil 37.13±8.17 t C ha-1. The additional stock gain and sequestration was found to be 27.83 t C ha-1, comparable to an uptake of 102.14 t CO2 ha-1.
  • Määttänen, Satu (2020)
    Agroforestry, a widespread land-use in tropics and especially in tropical drylands, is gaining increasing attention due its carbon sequestration and storage potential. Majority of African countries acknowledge agroforestry as a national climate change mitigation and adaptation strategy. Despite the large extent of African drylands and the commonness and importance of agroforestry systems to dryland livelihoods, these systems are scarcely studied and research on dryland African agroforestry carbon stocks are few. The aim of the study was to compare carbon stocks of three land-uses: Vitellaria paradoxa dominated parkland (PL), improved agroforestry system (IA) and, as a control, abandoned land (AL), to study carbon allocation between and within the land-uses and to examine the variability of biomass estimates of different allometric equations used in carbon inventory in West African Sahel. Study was conducted in two villages in Yorosso, Southern Mali. Carbon stocks accounted were woody above- and belowground biomass, litter and top-soil organic carbon. Allometric equations and root-to-shoot ratios were used for woody biomass measurement. Comparison of biomass estimations of different allometric equations and root-to-shoot-ratios was conducted by using multiple equations for the dataset. Total system carbon stocks were 24.7 MgC haˉ¹, 29.9 MgC haˉ¹ and 42.2 MgC haˉ¹, for PL, AL and IA, respectively, with statistically significant difference between PL and IA. Top-soil organic carbon (SOC) was important carbon pool, accounting 34.8 % of total system carbon in PL and IA, and 49.6 % in AL. There were no statistically significant differences on the SOC/biomass C ratios between the land-uses. PL had lower SOC stocks than IA or AL, difference being statistically significant. The reason for lower SOC stock of PL could not be explained in this study. IA had larger woody biomass carbon stocks (27.0 MgC haˉ¹) than PL (15.5 MgC haˉ¹ ) and AL (14.4 MgC haˉ¹), but the difference was not statistically significant due to the similar density of large mature trees in all of the land-uses and partly due to the large woody biomass variation within the land-uses. In all of the land-uses, most of biomass carbon was stored in large mature trees and in two species: V. paradoxa and Parkia biglobosa. Large woody individuals had major impact on the land-use level carbon stocks. For carbon conservation, these individuals should be preserved and spared even during land-use change. Despite relatively large density, young trees and shrubs stored diminutive amount of carbon compared to mature trees. As the currently young planted trees in IA will grow and mature in the future, the woody biomass carbon stocks of the system will increase significantly. Lack of regeneration observed in PL threatens the sustainability of the system and its carbon stocks. Future carbon storage potential of AL depends on the regeneration potential of large tree species. Comparison of different allometric equations for tree biomass estimation revealed substantial variation. The choice of allometric equation used affects the obtained results, hampering the comparison of studies using different equations. Commonly used root-to-shoot ratios vary on their estimations, and most probably by underestimating root biomass. There is a clear need for specialised and standard carbon inventory methods for drylands and agroforestry systems.
  • Pienimäki, Arttu (2014)
    The most extensive dry forest and woodland formation in sub-Saharan Africa, including Mozambique, is formed by miombo woodlands. Because of their wide distribution, the miombo woodlands carry significance in global carbon cycle. Previous studies have indicated that while the miombo aboveground carbon stocks appear modest in comparison with tropical rainforests, they have a potential to retain high stocks of soil organic carbon. The miombo landscape is nowadays characterized by widespread deforestation and forest degradation, with woodlands being replaced by anthropogenic land uses such as small-scale agriculture and charcoal harvesting. A new land use type spreading in northern Mozambique is formed by industrial forest plantations. The emerging plantations further change the landscape in transition, allegedly affecting the carbon stocks in the process as well. The purpose of this study was to quantify carbon stocks on locally relevant land use classes in Niassa province, northern Mozambique, and evaluate the change of carbon stocks caused by forest plantations. Six major land use classes were identified: dense miombo, open miombo, other woody vegetation, fallow land, eucalypt plantations and pine plantations. A sample plot grid was laid on chosen areas representing each of the classes. Vegetation aboveground carbon stocks (trees, shrubs and herbaceous vegetation) were recorded in the inventory and topsoil (30 cm) was sampled for soil organic carbon content, to be determined in laboratory. Vegetation belowground carbon stocks were calculated based on existing root to shoot ratios. Since plantations were generally juvenile on the study area, their average yield during rotation period was estimated based on growth models to provide comparable results. Forest plantations were found to have carbon stocks of the same order of magnitude as the two miombo land use classes. Open and dense miombo carried mean vegetation aboveground carbon stocks of 27.47 ± 5.77 and 37.65 ± 7.20 Mg ha-1 respectively, and mean total carbon stocks of 67.81 ± 17.09 and 86.81 ± 18.91 Mg ha-1 respectively, which was consistent with pre-existing results. Pine plantations placed in between with a partially modelled total aboveground mean carbon stock of 34.59 Mg ha-1, whereas the corresponding figure for eucalypt plantations was 21.04 Mg ha-1. Dense miombo had the highest mean total carbon stock of all the land use classes, and fallow land the smallest with 42.59 Mg ha-1. Soil organic carbon did not demonstrate statistically significant differences between any of the land use classes. The result was unexpected, and may be explained either by (i) limited time frame since the land use conversions or (ii) soil mineralogical properties buffering carbon stock changes.
  • Teräväinen, Venla (2021)
    Water interaction at cellular level has been investigated in Scots pine (Pinus sylvestris L.) sapwood section of acetylated and paraformaldehyde-treated woodblocks. Unmodified wood samples were used as reference samples. Acetyl group from acetic anhydride bounded to H of OH sorption site whereas paraformaldehyde bound to the sorption site and also create a cross-linking. Both mechanisms cause hindrance towards the accessibility of available sorption site but up to what extent which is unknown. With our designed approach, we can estimate the moisture uptake in both treatments. Knowledge of the cellular level changes is important to define wood physical properties. Wood is hygroscopic material which tend to reach to equilibrium moisture content. It causes dimensional instability and fungal degradation. The number of accessible OH sites correlates with wood’s ability to uptake moisture. Acetyl and methyl groups occupy the accessible sorption sites and limit the availability of free sites. Gravimetrical estimation of the available OH sites can relate to the effect of cross-linking and hindrance towards water molecules. Both modification methods reduced the equilibrium moisture content (EMC) and the sorption hysteresis. Maximum WPG of acetylation (17%) reduced 15.63% moisture content (MC). Maximum formalization WPG (7,5%) reduced 15.09% MC. Acetylation reduced water sorption through the relative humidity (RH) range 0-95%, whereas formalization reduced water sorption steadily, but only above 20% RH. This difference was caused by the cross-linking, which increased the stiffness of the cell wall polymers. The shape of sorption hysteresis was similar in all the samples. Still, formalization reached the maximum hysteresis at a lower point related to the other samples. Accessible sorption sites also reduced by modifications. Acetylated wood reduced the greatest amount of OH groups according to its high WPG value, 16%. The reduction of OH accessibility was steady with acetylation. In formalization, the reduction of accessible sorption sites was rapid and constant. With our developed method, we can precisely investigate the OH accessibility of both treatments, which can reveal the fundamental aspect of water uptake related to its structural changes at the cellular level.
  • Salminen, Veera (2024)
    In recent years, icosahedral internal membrane-containing single-stranded DNA (ssDNA) phages have been identified. Phages phi18:4 and phi48:2, both infecting Cellulophaga baltica bacteria and isolated from the Baltic Sea, are part of this phage group. Circular ssDNA genomes of these phages are different in length, but they are packed into capsids of uniform size which is unusual among viruses. Initially, the phages were cultivated using their original C. baltica host strains #18 and #48 but during the study, spontaneously induced #18ind virus was observed to originate from the #18 strain and possessed a double-stranded DNA genome. These observations led to an examination of the phage’s host range, ultimately resulting in the use of the #48 strain as a host for both phages. The life cycle strategy of both phages was lytic and efficiently produced viral progeny in the #48 strain. Zymogram analysis was utilized to investigate the presence of peptidoglycan-degrading enzymes in the phage structure, assisting in host cell penetration. Two possible peptidoglycan hydrolyzing enzymes were observed for each phage, although sequence data suggested only one enzyme. The formation of virions was analyzed by exposing the viruses to biochemical conditions. Freezing and thawing, along with guanidine hydrochloride treatment, turned out to separate the lipid membranes and capsid proteins of the virions but require further optimization for a detailed examination of the protein composition of the membrane. This study together with other research findings, clarifies the structure, life cycle, and evolutionary relationship of lipid-containing ssDNA phages in the context of other phages. In the future, phi18:4 and phi48:2 could serve as model systems for further investigations into other discovered Cellulophaga ssDNA phages.
  • Assimakopoulou, Irini Jr (2022)
    The genetic and morphological diversity of viruses and more specifically membrane-containing bacteriophages (phages) with single-stranded DNA (ssDNA) genomes is largely unexplored. It can be difficult to detect evolutionary relationships of viruses using solely sequence-based methods due to their rapid sequence evolution. However, more distant evolutionary connections of viruses have been observed based on structure data. Here we introduce an icosahedral tailless ssDNA phage, Cellulophaga phage phi48:2, isolated from the Baltic Sea that has not been assigned to any virus family or taxa. Phage phi48:2 has been previously linked to the family Finnlakeviridae whose members are icosahedral, internal membrane-containing phages with circular ssDNA genomes. However, the presence of lipids in phi48:2 virion has not been studied. In this study, different buffer conditions were tested for infectivity and stability of phi48:2 allowing us to optimize the purification of the phage particles by rate zonal and equilibrium ultracentrifugation in sucrose. Solvent tests in chloroform and ether, as well as low buoyant density of the virion suggested the presence of lipids in the phi48:2 virion. Analysis of the phi48:2 lipids extracted from highly purified virions by thin-layer chromatography revealed that phi48:2 is a membrane-containing phage and acquires its lipids unselectively from its host bacterium Cellulophaga baltica. Lastly, cryogenic electron microscopy of the purified virions also proposed that lipids form a membrane vesicle under the capsid. Altogether our results show that phi48:2 is an icosahedral membrane-containing phage, thus connecting it further with FLiP, which is the sole member of family Finnlakeviridae. Moreover, FLiP and phi48:2 virions are both ~60 nm in diameter and showed some similarity in their major capsid protein sequences (~21% amino acid identity). To conclude, even though phi48:2 and FLiP share various similarities they cannot be placed within the same family due to the low similarity in their genome sequences. However, for now we can assume they are possible distant relatives. The diversity and abundancy of membrane-containing ssDNA phages is gradually starting to uncover and through their characterization and classification we might consequently understand better their significance in microbial ecology.
  • Joas, Markus (2014)
    The Finnish forest industries are going through heavy adjustments as especially the western world is moving towards a more digitalized model where the amount of paper and pulp consumed is diminishing. It is obvious that the whole industry is in need for new solutions. These new solutions and innovations can be found from the field of bioenergy. Finland is rich with forest-based raw material which can provide a long-term and local source of energy. In the future this will be of primary importance as the prices of the non-renewable energy sources will climb higher as the deposits of the fossil fuels dry up. The usage of the renewable energy sources are also very important in order to prevent the global climate change and to achieve the goals regulated for Finland in the Kyoto Protocol and the European RES-E directive. This Master’s Thesis takes a look at the current state and the future trends of the Finnish wood pellet industries. The domestic wood-based pellet industries are studied with a concise literature review and a SWOT analysis based on the earlier literature. The analysis is linked to the future expectations and current retailer perspectives with a survey conducted between June and October 2013. The sample consists of 39 low, medium and high sales volume wood pellet manufacturers and retailers whom mostly do only domestic pellet trading business. Most of the strengths of the domestic wood-based pellet industries are related to different kinds of ecological aspects or different kinds of raw material related issues. In the future especially the prices of the raw materials, prices of other energy sources and prices of the end-product will be in a crucial role. Most of the survey participants underlined the significance of the governmental acts concerning the future of the whole business in Finland: a favorable taxing policy and different subsidies can make Finland truly a greener economy but this have not happened yet, much due to the unfavorable domestic politics. According to the survey respondents, in the future the demand of wood-based pellet services, especially tailored and ready-to-use services from maintenance to deliveries are going to increase.
  • McPartlin, Maria (2020)
    Cellular agriculture is a novel food production technology that utilizes tissue engineering techniques to culture muscle cells to make cultured meat, or microbes and fermenting to create proteins such as casein, albumin and collagen which can be processed to products similar to milk and egg white for example. This thesis aims to explore the challenges that cellular agriculture faces in terms of policy, politics and the society mainly in a Finnish context, but also observing EU regulations. These challenges were investigated by interviewing altogether 15 representatives of stakeholder groups, which are political parties, government administration, organizations of policy executioners, NGO’s, food-tech companies, -funds and research centres. The data from the interviews was transcribed and processed in Atlas.ti-software using the analysis of qualitative content -method. The processed data was then analysed using the analysis of a specialist interview -method. The study revealed that specialists agree that cellular agriculture products will follow EU Novel Food regulations, but that cellular agriculture might have to overcome some regulation-related challenges. Challenges might also arise from markets, consumers and competing with conventionally produced food. Some believed cellular agriculture to have a negative impact on the Finnish society in the form of eroding rural livelihoods, and that the production will be in the hands of large corporations. Many stated that they do not believe cellular agriculture will surpass conventional agriculture, but that it will become just another food innovation. Some believed cellular agriculture offers great possibilities in the form of more sustainable food production. Many of the statements of the interviewees reflected current events already underway in the cellular agriculture and alternative protein field. The challenges cellular agriculture will face are multifaceted, and more information is still needed, especially on the societal effects of cellular agriculture.
  • Kuukka, Juho J. (2020)
    The use of plastics has remarkably increased during the last 50 years. Due to its multi-use possibilities, durability and low cost the use of plastics is expected to double within the next twenty years. Despite the many benefits of plastics, the negative impacts to the environment, such as marine plastic, have raised the public attention and accelerated the demand for legislative action. To respond to these challenges, the European Commission (EC) engaged in developing a set of policies, such as the action plan for circular economy in 2015 which aimed to reduce the use of plastics and to enhance the recycling and reusing of plastics already in circulation. In 2018 the EC introduced a set of revised directives regarding the extended producer responsibility (EPR). I wanted to understand how this revised EPR scheme would be implemented into national legislation, and how it would be confronted by organisations such as ones dealing with wood products. Additionally, I also mapped the potential managerial implications for stakeholders resulting from the implementation of the scheme. I operationalised Primmer's (2011) framework of institutional adaptation which builds on two complementary strands of literature; policy implementation and organisational adaptation. The two focal research questions that derived from the framework were: How did the involved actors recognise and perceive the challenges in 1) implementing and 2) adapting to the extension to the existing EPR scheme in the use of plastic packaging of wood products? The data were collected by conducting seven semi-structured interviews with representatives of stakeholder organisations. The insights were explored and reported from these data via the means of qualitative content analysis. Considering the complexity of policy and the diversity of organisations across Finland – and the European Union, legislators are in a rush to implement the new requirements of the directives into the national legislation. Based on my studies the involved actors recognised the various challenges in the implementation and adaptation processes. There were also expectations that the policy will drive learning and innovation among organisations. Currently, legislation is the major driving factor in the development of plastic recycling and EPR schemes can be a robust legislative tool in attaining the targets, when developed and maintained accordingly.