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Browsing by study line "Genetiikka ja genomiikka"

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  • Id, Linda (2022)
    Breast cancer is the most common cancer in the world and among women the most cancer deaths causing cancer. MYC is a proto-oncogene, which becomes oncogenic when its expression is deregulated in cancer. MYC is commonly overexpressed in human tumours and this alteration is associated with aggressive cancer phenotype. Furthermore, alterations in the MYC network have been found in the great majority of breast cancers. MYC promotes mitochondrial apoptosis causing a cancer vulnerability, however, in cancer cells the apoptosis is often prevented by antiapoptotic BCL-2 family members. In this study, cell viability and cell death analysis of treated triple-negative breast cancer cell lines together with dendritic cell activation experiments were conducted. This study aimed to find the most potent BCL-2 family antagonist (BH3 mimetic) to combine with metformin to overcome the antiapoptotic BCL-2 family proteins inhibition of MYC-induced apoptosis. In addition, this study determined whether the combinations could induce immunogenic cell death to further intensify cancer cell killing through anti-tumour immunity. In this study, BH3 mimetics combined with metformin were found to induce cell death and reduce cell viability in TNBC cell lines. In addition, metformin and BH3 mimetics were found to activate dendritic cells directly and through immunogenic cell death of cancer cells. However, no MYC-dependent cell death or immunogenic cell death were observed, and this study was unable to indicate the most potent BH3 mimetic to combine with metformin.
  • Eriksson, Julia (2023)
    Inflammatory bowel disease (IBD) is a chronic autoimmune disease, with recurring inflammation in the gastrointestinal tract. Although the actual cause of the disease is still unknown, many molecular and underlying pathways have been discovered. Infliximab (IFX) is an effective and safe antibody medication that specifically targets the cytokine protein TNF-α. This medication is given to IBD patients who do not respond to other conventional drugs and who face the final step of surgery. However, around 30 % of IBD patients do not respond to this medication at all and another 50 % either lose the effect over time, or need to discontinue the medication due to severe side effects. Therefore, it would be important to find a biomarker that could predict the outcome of the medication. In this study, 73 IBD patients have given blood samples both before and three months after the start of IFX medication. From these blood samples the RNA was extracted and sequenced to get the transcriptome profiles. The aim of this study is to find novel biomarkers, that could be used as a predictive tool for the outcome of the medication. Seven significantly differentially expressed genes were found before IFX treatment initiation between responders and non-responders of the medication. Additionally, a clear effect from the IFX medication was seen in the transcriptome profiles.