| dc.date.accessioned |
2022-06-17T05:25:40Z |
|
| dc.date.available |
2022-06-17T05:25:40Z |
|
| dc.date.issued |
2022-06-17 |
|
| dc.identifier.uri |
http://hdl.handle.net/123456789/41766 |
|
| dc.title |
Genome-wide association mapping for disease resistance and fruit quality traits in Nordic association mapping panel of garden strawberry |
en |
| ethesis.faculty |
Maatalous-metsätieteellinen tiedekunta |
fi |
| ethesis.faculty |
Faculty of Agriculture and Forestry |
en |
| ethesis.faculty |
Agrikultur- och forstvetenskapliga fakulteten |
sv |
| ethesis.faculty.URI |
http://data.hulib.helsinki.fi/id/b197f237-5f76-4651-a885-b5b849512034 |
|
| ethesis.university.URI |
http://data.hulib.helsinki.fi/id/50ae46d8-7ba9-4821-877c-c994c78b0d97 |
|
| ethesis.university |
Helsingin yliopisto |
fi |
| ethesis.university |
University of Helsinki |
en |
| ethesis.university |
Helsingfors universitet |
sv |
| dct.creator |
Omran, Mohammad |
|
| dct.issued |
2022 |
|
| dct.abstract |
Strawberry breeding in Finland began 60 years ago and has largely relied on traditional breeding methods.
The geography of Finland, as well as local consumer preferences for darker-coloured strawberries,
have been the main focus of selection in all implemented Finnish breeding programs. With several
successful and popular cultivars have been released, the current focus is on increasing yield and disease
resistance while maintaining the excellent fruit quality of breeders' selections. A panel of 175 garden
strawberry accessions was created and trialled at the Natural Resources Institute Finland (Luke) as part of
a Nordic-Baltic pre-breeding collaboration between the institute and the Norwegian breeding company
Graminor AS. A medium-density, genome-wide scan for 50K SNPs has been performed on each individual
of the panel. This panel represents the genetic diversity present and typical for cultivated strawberry
in the Nordic-Baltic region, and it is expected to provide Nordic breeders with markers tailored to
their plant material diversity, supporting their future selection decisions and accelerating their breeding
cycles. In this study, symptom severities of two strawberry leaf diseases (leaf spot caused by Mycosphaerella
fragariae and leaf scorch caused by Diplocarpon earlianum) and seven fruit quality traits (berry weight,
skin colour, flesh colour, evenness of flesh colour, basket appearance, predominant berry shape and tip
type) were scored in the panel. GAPIT and statgenGWAS statistical packages in R were used to run five
different GWAS models: Significant SNP-trait associations were found using single-locus (GLM and
MLM) and multi-locus (FarmCPU and BLINK) association mapping analyses. The study had shed a
light on the importance of considering several statistical models and parameters for a maximum benefit
of association mapping studies. Among significant SNP-trait associations for fruit weight, fruit skin
colour and fruit flesh colour, four were partially characterized by inspecting their allelic effects. On chromosome
Fvb6-1, appearance of consensus, significant signals from the flesh colour trait of secondary-position
berries is discussed. Nine significant SNP-marker associations were detected for berry weight. |
en |
| dct.subject |
Garden strawberry |
|
| dct.subject |
Fragaria x ananassa |
|
| dct.subject |
berry weight |
|
| dct.subject |
fruit skin colour |
|
| dct.subject |
fruit flesh colour |
|
| dct.subject |
fruit quality traits |
|
| dct.subject |
strawberry diseases |
|
| dct.subject |
Mycosphaerella fragariae |
|
| dct.subject |
Diplocarpon earlianum |
|
| dct.subject |
statistical models in GWAS |
|
| dct.subject |
association mapping |
|
| ethesis.language.URI |
http://data.hulib.helsinki.fi/id/languages/eng |
|
| ethesis.language |
englanti |
fi |
| ethesis.language |
English |
en |
| ethesis.language |
engelska |
sv |
| ethesis.supervisor |
Tuuli Haikonen, Karisto Petteri, Ismo Strandén and Teemu Teeri |
und |
| ethesis.thesistype |
pro gradu -tutkielmat |
fi |
| ethesis.thesistype |
master's thesis |
en |
| ethesis.thesistype |
pro gradu-avhandlingar |
sv |
| ethesis.thesistype.URI |
http://data.hulib.helsinki.fi/id/thesistypes/mastersthesis |
|
| dct.identifier.ethesis |
E-thesisID:80231c3a-89b1-45f0-b0fe-89137cd3825f |
|
| ethesis-internal.timestamp.reviewStep |
2022-05-16 11:50:53:989 |
|
| ethesis.principalprofessor |
Teemu Teeri |
und |
| dct.identifier.urn |
URN:NBN:fi:hulib-202206172822 |
|
| ethesis.facultystudyline |
Kasvintuotantotieteet |
fi |
| ethesis.facultystudyline |
Plant production sciences |
en |
| ethesis.facultystudyline |
Växtproduktionsvetenskap |
sv |
| ethesis.facultystudyline.URI |
http://data.hulib.helsinki.fi/id/SH80_106 |
|
| ethesis.mastersdegreeprogram |
Erasmus-Mundus Master's Programme in Plant Breeding (EMPLANT) |
fi |
| ethesis.mastersdegreeprogram |
Erasmus-Mundus Master's Programme in Plant Breeding (EMPLANT) |
en |
| ethesis.mastersdegreeprogram |
Erasmus-Mundus Master's Programme in Plant Breeding (EMPLANT) |
sv |
| ethesis.mastersdegreeprogram.URI |
http://data.hulib.helsinki.fi/id/MH80_008 |
|
