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  • Jortikka, Anna (2019)
    Cyanobacteria are known producers of bioactive secondary metabolites. The compounds isolated here, heinamide variants A-G, are split into two groups based on their either 11 or 12-residue structure. These variants work in synergy between size groups to produce increased inhibitory effects toward the fungus Aspergillus flavus. However, like-sized variants do not work in synergy the way the 11-residue and 12- residue variants work together. A proposed gene cluster and biosynthetic pathway for the related compound scytocyclamide is characterized here and can be used as a hypothetical model for heinamide production. Though there are a variety of bioactive effects exhibited by related compounds, in this study heinamide was only found to have bioactive properties toward Aspergillus flavus.
  • Aparicio García, Marco (2023)
    The European Commission and the Finnish government have released their respective roadmaps in sustainable forest policy. With the European Commission pushing for further cooperation and integration in a field with no dedicated framework, it becomes vital to have a consensus on the concept of “sustainable forestry” with Member States such as Finland. Finland, on the other hand, as the most forested Member State in terms of percentage of total land area, manifests opposite views regarding how the administration is supposed to effect policy. This thesis consists of an analysis of respective documents from the European Commission and the Finnish government: the New EU Forest Strategy for 2030 and the Government Report on Forest Policy 2050. Similar in scope and structure, they clearly reflect these different attitudes towards policymaking and the role of policymakers themselves in the coming decades. The focus of this analysis is, however, their respective use of metaphors. With the theoretical support of the Advocacy Coalition Framework of Hank Jenkins-Smith and Paul Sabatier and the Critical Metaphor Analysis of Jonathan Charteris-Black, these metaphor choices are then observed to explain which stakeholders—either forestry, administrative, or environmental—are favored in each document. In this thesis, metaphors are words whose basic meaning, which is usually the one easiest to imagine, is not the one used in their textual context. From associating that missing, metaphorical meaning to chosen key concepts, this analysis shows that the metaphors found are used in cohesion with each other. This reveals a re-conceptualization of those key terms according to the accompanying metaphors. For example, the European Commission presented forests in its Strategy as “towns”, while the Finnish government saw them as “(ore) mines”. The results of this thesis reveal the consistency of metaphor choices in discourse and their significance in depicting a potentially different set of narratives from those contained in conventional language, both overtly and covertly. With these results in mind, scholars can further pursue research in other fields thanks understanding of metaphor and its prevalence in communication, or even expand this line of research into the role of media, for example.
  • Pykäläinen, Niina (2023)
    Despite active Indigenous movement in the country, Ecuadorian governments have continued to exploit natural resources with increasing speed legitimising extractivism as a means to social development. Indigenous women are gradually taking leadership positions in the predominantly male-dominant Indigenous movement in Ecuador, and Amazonian Indigenous women have strengthened ties with other groups as well. The research questions of this thesis participate in the post-developmentalist discussion on extractivism and alternatives, resistance and finding solidarities to fight against subordination and destruction of territories, knowledge, culture, bodies and life. Drawing from feminist political ecology’s critical decolonial and intersectional feminist perspective, the thesis analyses, what “truths” the Ecuadorian state is creating about development, Indigenous peoples and their territories, and what the possible implications to Amazonian Indigenous women are. It is also interested in what strategies Indigenous women use to resist the extractive policies justified with those “truths”, and what kind of spaces of resistance they are creating. By doing this, the thesis tries to answer, how Ecuador’s extractive policies affect eco-cultural pluralism in Ecuadorian Amazonia. The main method for analysis is a Foucauldian strand of critical discourse analysis, complemented with elements of qualitative content analysis. The primary data collected for this thesis consists of government development plans and official communication, as well as of a report, statements and social media publications by Indigenous organisations and collectives. In Ecuadorian governmental discourses further expansion of extractivism(s) is still justified with economic and social development, especially in the areas of impact. What is new in the governmental discourses is the wide dismissal of Indigenous peoples’ existence and conceptualisations of “good living”. Dismissing topics, such as Indigenous peoples’ rights to their territories, and discrediting Indigenous knowledge suggests that citizen participation and eco-cultural pluralism are supported only as far as they do not threaten the development of strategic sectors of the state. Amazonian Indigenous women resist extractivism with multiple strategies. They are building solidarities by establishing alliances with ecofeminist groups, international environmental NGOs and human rights organisations. By tying their ethno-territorial demands into global climate and social justice discourses Indigenous women are opening a shared space able to mobilise larger crowds for their cause. Thus, while making visible the embodied impacts of patriarchal extractivism, Indigenous women are also simultaneously decolonising feminism. Although hegemonic government discourses embrace nationalist imaginaries and identities related to extractivisms, the resistance of Amazonian Indigenous women may cultivate common ground of understanding with the rest of the Ecuadorian society and international community.
  • Tuovinen, Emilia (2016)
    This study's key goal was to compare the brain morphology of musicians who play symmetric instruments to musicians who play asymmetric instruments. Also, musicians' brain morphology of both groups together were compared with the brain morphology of non-musicians. The participants in this study completed questionnaires regarding their musical backgrounds. MRI scans of their brains were analyzed using FreeSurfer- software. Our two main hypotheses were that 1) asymmetrical instrumentalists have a larger right hemisphere precentral gyrus than symmetrical instrumentalists and 2) symmetrical instrumentalists have larger corpus callosa (CC) than asymmetrical instrumentalists. We also aimed to replicate other findings related to these brain areas from previous studies. To a nonsignificant level, the key findings in this study are: musicians have a larger central and anterior CC compared to non-musicians and symmetrical instrumentalists have a larger anterior CC than asymmetrical instrumentalists. Compared to non-musicians, musicians have larger absolute volumes of precentral gyri in the right hemisphere but smaller in the left. When comparing relative sizes, both precentral gyri are larger in musicians than in non-musicians. Asymmetrical instrumentalists have a larger LH and RH precentral gyri, relatively and absolutely. Our findings partly support our theses to a statistically nonsignificant level.
  • Havu, Ninka (2016)
    Medical Faculty of University of Helsinki desires to improve teaching and learning methods based on simulating techniques. The aim of this study is to describe the development process of a Skills lab and peer-assisted learning. We inquired students' and teachers' opinions and wishes on skills training, and use of the Skills lab by web questionnaires. After analyzing results, we purchased numerous new training phantoms, recruited three peer assistants, expanded opening hours, and started collecting feedback by a web form. 220 students and 52 teachers answered, their wishes for new skills training possibilities were surprisingly similar. In first three months, 66 students' average grade for the expanded Skills lab was 4.5. Both students and teachers consider skills lab training beneficial and worth increasing. A diversely equipped Skills lab attracts students, but continuous advertising is essential. Students should be inspired to train by themselves too, in order to gain enough repetition.
  • Schröder, Celina (2019)
    Forskningens mål är att finna de kunskapsdomän som krävs för att lösa fysikuppgifter i studentexamensprovet i fysik på ett framgångsrikt sätt, för att sedan kunna avgöra svårighetsgraden på uppgifterna. Detta gjordes genom att undersöka tidigare forskning i ämnet. Man kom fram till att svårighetsgraden påverkades av de kognitiva färdigheter uppgiften krävde, det fysikområde uppgiften behandlade och de praktiska processer eleven måste göra för att lösa uppgiften. Dessa färdigheter delades in i hierarkiska undernivåer och sammanställdes till en taxonomi för studentexamensuppgifter i fysik. Man undersökte 143 studentexamensuppgifter i fysik från åren 2006 – 2016 och tilldelade dem poäng enligt de undernivåer de representerade i taxonomin för studentexamensuppgifter i fysik. Dessa poäng användes som rådata tillsammans med de medelpoäng elever fått i samma uppgifter. Rådatan användes av ett artificiellt neuronnätverk programmerat i GNU Octave som tränades att förutse medelpoängen för nya uppgifter. Man kunde konstatera att neuronnätverket fungerade bäst för lättare uppgifter där elever fått höga poäng och mindre bra för uppgifter som genererat lägre medelpoäng i studentexamen. Neuronnätet testades och klarade av att beräkna medelpoäng som hade korrelationskoefficienten R^2 = 0,90 med de verkliga medelpoängen. Taxonomin för studentexamensuppgifter i fysik kan användas av provkonstruktörer som vill säkerställa att alla uppgiftstyper representeras i provet och av lärare som vill se till att dessa övas i undervisningen
  • Nuutila, Katariina (2014)
    The present study focused on the relations between students' achievement goal orientations and personal goals. Achievement goal orientation represents a persons generalized tendency towards favoring certain type of goals and outcomes in an achievement context such as school. Achievement goal orientations are related to a variety of outcomes, such as adaptation to school, achievement and subjective well-being. Personal goals work as vehicles through which the individual guides his or her development and they play important role in different life transitions. The way a person chooses and manages his or her personal goals is related to achievement in different life domains, satisfaction in life and well-being. Both personal goals and achievement goal orientations are considered as important factors in adolescents' adaptation to different developmental demands. The possible interrelation between the two phenomena however has not yet been studied. Accordingly, the purpose of this study was to examine whether students belonging to different achievement goal orientation groups differ according to their personal goals. 1395 first year upper secondary school students filled in a questionnaire tapping different motivation constructs. Several statistical analyses were run on the collected data and a person-centered approach was applied to the data-analysis. By utilizing latent class clustering, five distinct achievement goal profiles were extracted from the study sample. Following each groups' most pronounced motivational tendencies, the groups were named as indifferent, learning-oriented, success-oriented, performance-avoidance-oriented and avoidance-oriented, respectively. Through content-analysis, 13 personal goal categories were formed: present education, work/occupation, relationships/marriage/having children, health, hobbies/free time, friends and family, money/property, life style, future education, travelling, moving, and self-related negative goals. Few differences with regards to the personal goals were found between the identified goal orientation groups. The groups differed according to their interest in goals related to present education, future education, and career, with the less adaptive groups, the avoidance- and performance-avoidance-oriented, displaying significantly less interest in these goals than the other groups. The learning-oriented listed significantly more goals related to future education and career and, somewhat surprisingly, the indifferent had more personal goals related to present education than the other groups. Study and work related goals are considered as important for successful transition from adolescence to adulthood as both adaptation to school and entrance to further education and working life are one of the most important developmental tasks. It seems that the students with less adaptive achievement goal orientation also display somewhat less favorable personal goal preferences. These students might benefit from counseling and guidance, as they might be potentially at a higher risk for disengaging from school.
  • Raitanen, Piritta (2009)
    The phenomenal globalization of business is the main incentive for the study of business ethics and Corporate Social Responsibility (CSR). With an increase in transnational trade over the past decades, an understanding of acceptable business practices across cultural boundaries is particularly important. Public concern for global issues such as climate change, raw material procurement, human rights, labor policies and corporate governance has significantly increased. Business corporations are obligated to operate as members of communities, organization as such is not allowed to exist if it does not gain acceptance and support from those in its environment. Furthermore, CSR can be seen as a competitive advantage – one dimension of corporate reputation and image. As future managers and consumers the current students are shaping the construct of corporate responsibilities. The future of CSR depends much on the attitudes of coming generations. The purpose of this study was to investigate how and to what extent the personal values and perceptions of CSR differ among Chinese, Finnish and American students. The theoretical frame of reference suggests that perceptions of CSR are affected by background variables – gender, nationality and study major – both directly and through personal values. The nature of the study was quantitative and the sample consisted of altogether 1547 students from Finland, China and USA. The data has been gathered using questionnaires. The results of the study support previous findings of significant cultural and gender related differences in personal values and perceptions of CSR. Generally, female respondents and students majoring in forest ecology and environmental sciences possessed softer values and accepted or supported NGOs’ activity and governmental regulation in business life. The Chinese represented harder and more masculine values, whereas the American respondents emphasized soft values and stakeholder welfare. Overall, the Chinese data was the most homogenous, whereas the difference between genders was the most significant in Finland. Further research would be needed to find out if and how the values and perceptions are evolving over time. It remains to be seen, whether the ongoing globalization will decrease cultural differences in values and CSR orientation.
  • Juntunen, Henriikka (2019)
    Aims. Achievement goal orientations have often been studied as rather general individual tendencies to favour certain goals, results and consequences, but they may also demonstrate subject-specificity. Studies taking several academic subjects into account simultaneously, and by utilising a person-oriented approach in particular, are still scarce. Task values (i.e., intrinsic, attainment, utility, cost), in turn, refer specifically to subject-specific beliefs that influence students’ choices and performance. There is a need to understand patterns of subject-specific goal orientations as well as their relations to perceived subject-specific cost and to more general academic well-being better. This study examined upper secondary school students’ subject-specific (mathematics and English) goal orientation profiles and how students with different profiles differ in subject-specific cost (i.e., effort, emotional, and opportunity cost) and academic wellbeing (i.e., schoolwork engagement and school burnout). Methods. Data were collected by questionnaires. Altogether, 434 students from one general upper secondary school in Finland participated in the current study. Preliminary analyses concerning structural validity were conducted using confirmatory factor analysis (CFA). Regarding motivational profiles, students with similar patterns of achievement goal orientations were identified utilising a person-oriented approach and latent profile analysis (LPA). After establishing groups, analyses of variance (ANOVA) were conducted to examine group differences. Results and Conclusions. Five distinct goal orientation profiles were identified: mastery-oriented (24,9%), success-oriented (25,8%), English-oriented, math-avoidant (14,3%), indifferent (28,8%), and avoidance-oriented (6,2%). Evidence for both domain-generality and -specificity of goal orientation profiles was found. These profiles differentiated in cost and academic wellbeing. Overall, mastery-oriented showed the most adaptive wellbeing and avoidance-oriented the most maladaptive. Success-oriented group, characterised by high multiple goals, also scored high on cost and both adaptive (i.e., engagement) and maladaptive (i.e., burnout) academic wellbeing indicators. The findings indicate that examining students' multidimensional achievement motivation in different subjects may be valuable for comprehending the motivational dynamics and in recognising the factors endangering and fostering student learning and wellbeing.
  • Eerola, Pinja Kiira Linnea (2024)
    This MA thesis investigates student teacher attitudes on using the community language (L1, Finnish) and target language (L2, English) in English language teaching. In this thesis, the alternate use of two languages within the same classroom discourse is referred to as code-switching (CS). Several studies have examined teachers’ language choices and attitudes on the use of CS and this thesis aims to add more insight into how student teachers in Finland perceive the practice of CS and how well they have been educated on the phenomenon. The study sets out to answer the following the research questions: 1) How do EFL student teachers in Finland perceive the practice of classroom CS during their teaching practices in schools? 2) What are the main reasons or motivations for such classroom practices? 3) How well is classroom language use covered in teacher education programs? The data for the study was collected through an online questionnaire that was sent to student teachers in the University of Helsinki finishing their teaching practice. The questionnaire yielded mostly quantitative data, but also some qualitative data from open-ended questions. The findings illustrate that student teachers see value in using students’ L1 while also recognizing the need for extensive input and output in learning the L2. The implications for teacher education are also highlighted, as research-based language teaching could be improved with education on the principled use of CS in L2 classroom discourse.
  • Maury, Olivia (2015)
    This master's thesis examines extra-European international students as an important part of the migrant labour force in Finland. Student migration is one of the fastest growing forms of migration today. Student migrants have principally been discussed in relation to education policy, human capital and the unwanted brain drain has been underlined. Aspects outside of the education-related have been studied less and for example wage work done by non-European students with a student visa in Finland has been ignored to a large extent. This thesis builds over the gap between the administrative migration-categories student-migrant and migrant-worker. Accordingly, the main subjects in this thesis are named student-migrant-workers. Emphasis is also put on the racist structures these migrants are confronted with at work and in everyday life as well as on their social and legal position in Finland. The analysed material consists of seven semi-structured theme interviews with migrants from five different countries in Sub-Saharan Africa who came to Finland in order to study. The analysis departs from a critical perspective on borders that underline how borders, and extensions of these, function as control mechanisms within the migration administration. Today borders no longer constitute a clear dividing line between nation-states, but are instead flexible and located at the centre of the migrants lives. The extensions of borders the analysis emanates from, is the temporary residence permit the migrants have obtained and how it influences their possibilities of forming their life in a way they would want to. Since the residence permit implies certain requirements for the migrants and restricts their social and political rights, this scope is remarkably limited. The thesis illustrates how borders, in the form of the student s residence permits, produce a precarious labour force that is easy to exploit. As will be seen, most of those holding a student s residence permit have no other choice than wage working in order to avoid deportation. Because of the strict limitations, these migrants are produced as flexible workers that quickly can react to the demand on the labour market. The analysis also shows that boundaries are created on the basis of race , ethnicity and language and also influence the position on the labour market as well as the experiences of everyday life. The analysis is situated in a context of migration in contemporary capitalism and shows that borders produce new subjectivities that are possible to utilize in the current economic system. The temporariness the characterises the lives of the student-migrant-workers renders inclusion in society more difficult and questions in this way integration as analytical tool in contemporary migration research.
  • Mattila, Markus (2015)
    Studerandes begreppsförståelse är av stort intresse inom fysikundervisningen. Inte minst eftersom slutprov och eventuella förhör ofta ämnar att summativt bedöma just denna begreppsförståelse. De olika fysikaliska begreppen förekommer dock inte som från varandra isolerade entiteter, utan är kopplade till varandra på olika sätt via modeller. I den här undersökningen utreds hurdana förklaringsmodeller studerande använder då de förklarar glödlampors relativa ljusstyrka i likströmskretsar. Förutom själva förklaringsmodellerna så undersöks även hur studerandes användning av förklaringsmodeller ändras då de löser samma uppgift andra gången. Dessutom granskas hurdana förklaringsmodeller används av de studerande som är bra på att lösa de framförda likströmskretsuppgifterna. Som grund för forskningen användes transkriberade intervjuer där studerande skulle göra förutsägelser om likströmskretsar som presenterades för dem. Som intervjuobjekt fungerade femton (N=15) studerande på Helsingfors universitet vilka alla var ämneslärarstuderande med fysik som biämne. Ur detta material plockades sex (N=6) studerande vilkas svar analyserades med hjälp av en latent innehållsanalys. Totalt tretton olika förklaringsmodeller kunde urskiljas i studerandes resonemang. Då studerande löste samma uppgift för andra gången kunde två saker observeras. Om lamporna i likströmskretsen hade samma resistans så minskade de studerande i regel på antalet förklaringsmodeller de använde. Men om lamporna i likströmskretsen hade olika resistans så kunde motsvarande minskning inte observeras. De studerande som ofta resonerade korrekt i uppgifterna använde sig av förklaringsmodeller där begreppen elektrisk effekt eller energi framkom.
  • Nylund, Katarina (2020)
    Förändringarna i arbetslivet och det livslånga lärandet har under de senaste årtionden varit centrala diskussionsämnen inom den nationella arbetsmarknads- och utbildningspolitiken. Kraven på framtidens arbetskraft har ändrats och för att arbetstagare ska kunna behålla sin anställningsbarhet krävs ständig kompetensutveckling. Formerna av att utföra arbete har förändrats och så kallade atypiska anställningsförhållanden så som deltids- och visstidsarbete samt arbete genom bemanningsföretag har blivit allt vanligare. Personer i arbetslivet har sällan möjlighet att vidareutbilda sig och uppdatera sin kompetens endast på fritiden. För att kunna behålla sitt arbetsförhållande men ändå ha förutsättningar och tid att studera infördes på 1970- och 1980-talen rätten till studieledighet i både Finland och i Sverige. Trots att det funnits planer på att revidera lagstiftningen gällande studieledighet i både Finland och Sverige har inga större ändringar gjorts i studieledighetslagarna. Syftet med denna avhandling att jämföra studieledighetssystemen i Finland och Sverige och på så sätt försöka hitta sätt att utveckla regleringen av studieledighet i Finland. De två frågeställningar som avhandlingen kommer att försöka ge svar på är följande: 1) Vilka skillnader har de svenska och finska studieledighetssystemen? och 2) Hur lämpar sig studieledighetslagen för vissa atypiska anställningsförhållanden? Förutom dessa två frågeställningar kommer avhandlingen även att lyfta fram vissa de lege ferenda-synpunkter med syfte att försöka hitta sätt att utveckla det finska studieledighetssystemet. Avhandlingen inleds med en överblick om studieledighetens historia och utveckling. Därefter är avhandlingen uppdelad i fyra huvudkapitel. Det två första huvudkapitlen behandlar arbetstagarens rätt till studieledighet och begränsningar av denna rätt. Genom att granska de centrala bestämmelserna i den finska och svenska studieledighetslagen kommer avhandlingen att redogöra för skillnader och likheter mellan studieledighetssystemen i Finland och Sverige. Det tredje huvudkapitlet behandlar arbetstagarens möjligheter till ekonomiskt stöd under studieledigheten. Eftersom arbetsgivarens skyldighet att betala lön upphör när arbetstagaren blir på studieledighet måste arbetstagaren finansiera sin studieledighet på något annat sätt. I Finland inrättades redan då studieledighetslagen stiftades ett vuxenutbildningsstödsystem, men någon motsvarighet finns inte i Sverige. I detta kapitel jämförs de olika stödformerna som är tillgängliga i Finland och Sverige för arbetstagare som beviljas studieledighet. I det fjärde huvudkapitlet behandlas studieledighet ur visstids- och deltidsanställdas synvinkel, samt hur studieledighet kan utnyttjas av de arbetstagare som är anställda av ett bemanningsföretag. I kapitlet redogörs för hur dessa atypiska anställningsförhållanden påverkar arbetstagarens rätt till studieledighet och hur de föråldrade studieledighetslagarna passar ihop med dessa anställningsformer. Slutligen förs en sammanfattande diskussion om hur de finska och svenska studieledighetssystemen kunde utvecklas för att bättre motsvara det förändrade arbetslivets behov.
  • Silva, Ximena (2011)
    The Scots pine bark beetle, Tomicus piniperda is a secondary colonizer of pine and other conifers. It is a native species from Europe and Asia that was recently introduced in North America. Although it is necessary to understand this insect's interactions with other organisms, few studies have focussed on its fungal associates. This study focused on the effect of latitude in the occurrence of fungi associated with T. piniperda. T. piniperda were collected from Pinus sylvestris in Northern (Rovaniemi) and Southern (Hyytiala) Finland. Both endo- and epi- mycota were isolated. The fungi were identified using a combination of morphological features and molecular data. The results revealed a great diversity of fungi species associated with T. piniperda, with a total of 3073 isolates representing 23 species. The most frequently isolated fungi in the bark beetles from Northern Finland were Beauvaria bassiana, Kuraishia sp. and Penicillium sp. whereas P. brevicompactum and Mortierella sp. were mostly observed in the South. Ophiostoma canum and O. minus were also observed. The number of isolates per insect in the north was 2.83 epi- and 2.38 for endo-mycota fungus. In the south, the number of isolates per insect was 4.1 for epi- and 3.5 for endo-mycota. Statistical analysis indicated that there was significant differences in fungal populations associated with the beetles in Southern and Northern Finland. There was however no significant difference between the epi- and endo-mycota fungal populations. The highest richness and diversity of the fungal species was observed in the South. However, the overall fungal diversity index analysis revealed that the mycobiota was undersampled.
  • Lintuluoto, Adelina Eleonora (2021)
    At the Compact Muon Solenoid (CMS) experiment at CERN (European Organization for Nuclear Research), the building blocks of the Universe are investigated by analysing the observed final-state particles resulting from high-energy proton-proton collisions. However, direct detection of final-state quarks and gluons is not possible due to a phenomenon known as colour confinement. Instead, event properties with a close correspondence with their distributions are studied. These event properties are known as jets. Jets are central to particle physics analysis and our understanding of them, and hence of our Universe, is dependent upon our ability to accurately measure their energy. Unfortunately, current detector technology is imprecise, necessitating downstream correction of measurement discrepancies. To achieve this, the CMS experiment employs a sequential multi-step jet calibration process. The process is performed several times per year, and more often during periods of data collection. Automating the jet calibration would increase the efficiency of the CMS experiment. By automating the code execution, the workflow could be performed independently of the analyst. This in turn, would speed up the analysis and reduce analyst workload. In addition, automation facilitates higher levels of reproducibility. In this thesis, a novel method for automating the derivation of jet energy corrections from simulation is presented. To achieve automation, the methodology utilises declarative programming. The analyst is simply required to express what should be executed, and no longer needs to determine how to execute it. To successfully automate the computation of jet energy corrections, it is necessary to capture detailed information concerning both the computational steps and the computational environment. The former is achieved with a computational workflow, and the latter using container technology. This allows a portable and scalable workflow to be achieved, which is easy to maintain and compare to previous runs. The results of this thesis strongly suggest that capturing complex experimental particle physics analyses with declarative workflow languages is both achievable and advantageous. The productivity of the analyst was improved, and reproducibility facilitated. However, the method is not without its challenges. Declarative programming requires the analyst to think differently about the problem at hand. As a result there are some sociological challenges to methodological uptake. However, once the extensive benefits are understood, we anticipate widespread adoption of this approach.
  • Korsisaari, Nina Kristiina (1998)
    Cells in tissues have only three serious options in life; they can grow and divide, remain static, or die by apoptosis. Upon growth factor stimulation a cell enters the so called cell cycle which will eventually lead to the division of the cell. Cell cycle can be divided into four phases; G1, S, G2 and M. The current model of the cell cycle control holds that the transitions between different cell cycle states are regulated by cyclin dependent kinases (CDK) with their activator subunits, the cyclins. CDK regulation can be separated into four distinct mechanisms, one of which being phosphorylation on the so called T-loop leading to complete activation. This phosphorylating activity is mediated by apparently a single enzymatic activity termed the CDK activating kinase, CAK. CAK activity was originally isolated as a biochemical purification extract and the enzyme was surprisingly noticed to be structurally related to CDKs. Since a novel cyclin was identified to be associated to it, the enzyme exercising CAK activity was named CDK7 and the cyclin was designated cyclin H. An entirely new perspective on CDK7 function was opened when CDK7 was identified as a subunit of transcription factor IIH (TFIIH) and shown to phosphorylate the carboxy-terminal domain (CTD) of RNA polymerase II (RNAPII). CDK7 has also been suggested to be involved in irradiation sensitivity pathways and nucleotide excision repair functions. To elucidate the intriguing in vivo role of CDK7, proteins interacting with CDK7 were screened for using the yeast two-hybrid method as part of previous studies of the laboratory. The results showed that 15 out of 144 (10,4%) positive clones were identified to encode a peptide sequence of a protein previously known as the inhibitor/interactor of protein kinase C (PKCI). These yeast colonies had an unexpected phenotype; contradictory to a dark blue color of the colonies, indicating strong interaction, the size of the PKCI colonies was small compared to others, indicating a possible growth inhibition effect. Several DNA open reading frames (ORF) coding for proteins related to human PKCI have been identified in a broad range of species representing mammalian, plant, fungal and bacterial kingdoms, all these forming a HIT (conserved triad of histidines) protein family. Another human member, part of this now super family, named FHIT (fragile triad of histidines) was identified with a dinucleoside 5’,5’’’-P1,P3-triphosphate hydrolase activity. These molecules; substrates of FHIT and related enzymes have been proposed to have various intracellular functions, including signalling stress responses. The aim of this study was to extend the investigation of the interaction between CDK7 and PKCI observed in yeast two-hybrid by means of several genetic and biochemical approaches to determine if this observed interaction and growth phenotype has any physiological significance. Investigations included performing yeast two-hybrid screening for PKCI, developing yeast three-hybrid system and carrying out growth rate assays for yeast liquid cultures. These studies also included performing biochemical purifications of over-expressed proteins, immunoprecipitations, western blot analysis and kinase activity assays. Protein extracts originated from transformed yeast cells, transfected mammalian cells or from in vitro transcription and translation reactions. On basis of growth rate assays it can be concluded that PKCI has an inhibitory growth effect in yeast. The preliminary finding of a specific PKCI-CDK7 interaction in yeast two-hybrid, however could not be conclusively verified by the other methods that were used in this study. Studies of PKCI characterisation also included examination of the subcellular localisation of PKCI in mammalian cells by immunofluorescence labelling of HA-PKCI. Results showed PKCI to localize both in the nucleus and in the cytoplasm. Also, studies to elucidate the function of PKCI were performed; whether it possesses enzymatic activity related to that of FHIT. By NMR spectroscopy using bacterially produced GST-PKCI, hydrolase activity towards ADP was indeed observed. Future studies will include elucidation of possible links between growth inhibition and hydrolase activity, in the form of stress signalling functions. The main focus of our future studies will be the generation of mice with targeted PKCI alleles offering powerful means to reveal the function of PKCI through observing phenotypes and through detailed analysis of these mice harbouring wild type, hypomorphic or null alleles.
  • Begum, Sakina (2021)
    Bartonella species are facultative intracellular bacteria causing variety of diseases in humans and also infects endothelial cells and erythrocytes. Some Bartonella species utilize VirB/VirD4-type IV secretion system (T4SS) in order to secret Bartonella effector protein A (BepA) which infects endothelial host cells by inhibiting the apoptosis. But the enterotoxin homolog in Bartonella gene A (EhbA) and the enterotoxin homolog in Bartonella gene B (EhbB) are found in the non-BepA Bartonella strains. In my Master’s thesis, I study the host cell binding activity and identify host cell surface receptor of EhbB in Bartonella. In my thesis, the cell adhesion of multimeric B proteins of enterotoxin homologue in Bartonella (Ehb) have been analyzed with cell adhesion assay using HEK293T, HeLa 229, Ea.hy926, and CHO-K1 cells. The assay was conducted with EhbB1 and EhbB 1-1C proteins from Bartonella Bovis strain Bermond and Bartonella strain spp 1-1C and the experiment indicated the cell adhesion activity of both EhbB proteins compared to the controls used in the experiment. Moreover, the binding activity of EhbB1 with Ea.hy926 was studied at several incubation time points, such as; 30 min, 2 hours, 4 hours, 6 hours, and 8 hours. Several incubation period of EhbB1 and EhbB 1-1C with Ea.hy926 cells did not enhance cell surface adhesion because the same absorbance compared to controls. The interaction of EhbB1 with cell membrane HEK293T was studied by using western blot on cell membrane preparation from Ea.hy926 cells which was used to identify possible protein receptor of EhbB1. The experiment suggests that EbB1 is binding to receptors present on the cell membrane of HEK293T which could be protein. The cell adhesion activity of HEK293T cell membrane with EhbB1 was analyzed by inhibition assay. This experiment indicated that EhbB1 protein attached to cell surface receptors present on the HEK29T cell membrane, which inhibited EhbB1 protein to attach to Ea.hy926 cells. This also indicate that the cell surface receptor for EhbB1 could be protein but requires further study.
  • Tenhovirta, Salla (2012)
    The powdery mildew of strawberry (Podosphaera macularis) causes yield losses in both fields and under glass. The ability to resist the infection of powdery mildew is a desirable attribute in the breeding of new cultivars. The assessment of powdery mildew resistance of cultivars by laboratory tests would give tools to quickly separate resistant cultivars from susceptible in the process of plant breeding. The purpose of this study was to compare the powdery mildew resistance of strawberry cultivars demonstrated in laboratory and greenhouse tests, and to evaluate the methods used. In addition, it was tested in the F2 crossing populations of wild strawberry if the ability to resist powdery mildew could be genetically linked to a phenotypic character of runner production or the flowering habit. The ability to resist powdery mildew of the garden and wild strawberry was assessed in laboratory tests by inoculating detached leaflets of in vitro grown plants with conidia of powdery mildew, and incubating them in closed Petri-dishes with moist filter paper for two weeks. The symptoms of powdery mildew were assessed visually from the leaflets. Garden and wild strawberry plants were exposed to powdery mildew in the greenhouse, and the symptoms were assessed during an eight-week period. The detected differences between the garden strawberry cultivars were compared to the laboratory results. The differences between individual plants were observed in the F2 crossing populations of wild strawberry. The runnering/non-runnering trait and the flowering habit were also defined, and the connection of these traits to the powdery mildew resistance was tested. Runnering was observed from the plants in the greenhouse, and the flowering habit was determined in the laboratory with specific markers. The comparability between the laboratory and greenhouse tests of garden strawberry was poor. The variance in the laboratory data was great due to the difficulties in the controlling of the conditions, and the quality of the inoculum. Probably because of these problems the laboratory tests on the wild strawberry failed completely. In the greenhouse there could be seen differences between the individual plants of the F2 populations of wild strawberry. The differences were not able to be statistically linked to the habit of runner production or the flowering habit, but a hint of a weak connection could be observed between the runner production and the powdery mildew resistance. Stable conditions and the quality and freshness of the inoculum have a great role in the success of laboratory tests in assessing powdery mildew resistance. In the greenhouse the disease pressure should be kept limited, so that the differences in the resistance to powdery mildew can be assessed. The connection between the runner production and the powdery mildew resistance could be experimented in the future with a bigger test group.
  • Dürnsteiner, Pia Karoliina (2022)
    Multiple sclerosis (MS) is one of the most common reasons for neurological disability in young adults, yet the aetiology of the disease remains to be discovered. MS involves an autoimmune reaction in the central nervous system, which results in demyelination, axonal degradation, and inflammation. These result in various symptoms, such as motor and sensory disturbances, cognitive symptoms, fatigue, and problems with balance. MS is chronic and progressive, and medications are used to slow the neuronal damage and reduce relapses. The most evident risk factor for MS is Epstein-Barr virus (EBV) infection, as nearly 100% of MS patients are seropositive for the virus. However, the mechanism how EBV contributes to the disease is not known. A highly sensitive quantitative multiplex PCR method was used to examine reactivation of EBV and eight other human herpesviruses in the saliva of MS patients (n=9) and healthy controls (n=7). Single-cell RNA sequencing methods were used to study the cell composition and expression patterns of cerebrospinal fluid (CSF) in treatment-naïve MS patients at the diagnostic phase (n=4) and in controls (n=4). EBV was found to be shedding in eight out of nine MS patients and in only one control, and the viral load was significantly higher in MS patients. Single-cell sequencing of the CSF revealed that MS induces expansion of antibody producing and cytotoxic cell types. Differential expression analysis found that MS CSF B cells significantly express EBNA1BP2, which plays a crucial role in the replication and partitioning of EBV episomes in infected cells. These results support the involvement of EBV in MS. Better knowledge of the viral role in the onset of MS will be useful in the development potential antiviral drugs and EBV vaccination that could even prevent the disease.
  • Tapio, Salla (2019)
    Cancer is one of the most common causes of death worldwide and the amount of cancer deaths is expected to increase due to population growth and lifestyle choices that increase cancer risk. Even though there is a great variety of treatment approaches available, new and more efficient options are in high demand. Targeted radionuclide therapy is a form of internal radiation therapy that can be used to selectively target cancer cells. It utilizes radiopharmaceuticals, molecules that contain a radionuclide and a targeting vector part (biomolecule) which can bind to certain entities expressed on cancer cell surfaces. Ways to produce and purify new radionuclides suitable for cancer therapy are constantly investigated. Radionuclide precursors of high chemical and radionuclidic purity are needed for radiolabelling of the biomolecules used as targeting vectors. Radionuclides are often produced by proton irradiation of stable target material and separation of the radioisotope of interest from the target material is a vital part of nuclide production. Auger electron emitter Erbium-165 is a potential radiolanthanide for cancer treatment. Its production would require separation of Erbium from either Holmium or Thulium, adjacent lanthanides to Erbium. LN resins are extraction chromatography resins developed especially for lanthanide separations. In this work, the suitability of these resins for Holmium/Erbium and Erbium/Thulium separations was investigated. In order to assess the possibility of separating the lanthanides of interest on LN resins, the retention capacities of the lanthanide were determined on each resin. In addition, column separation experiments were performed.