Biological cell is complicated and complex environment, in which thousands of entities interact surprisingly among each other. This integrated device continuously receives internal and external signals to perform the most vital processes to keep the continuation of life. Even though thousands of interactions are catalysed in very small spaces, biologists assert there are no coincidences or accidental events. On the other hand, fast discoveries in biology and the rapid evolution in the data pool make it even more difficult to construct concrete perspective that scientifically interprets all observations. Thereby, co-operation has become necessary between biologists, mathematicians, physicists and computer engineers. The goal of this virtual corporation is pursuance what is known as modelling biological network.
The final thesis is aiming to make comparisons across different computational tools, which are built for modeling biological network. Additionally, technical themes, such as reaction kinetic, are explained beforehand. These topics represent backbone in the software functionality. Beside the technical issues, the study will compare different features such as GUI, command line, importing/exporting files, etc.
