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Browsing by Subject "quality control"

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  • Duarte, Daniel Pereira (2016)
    Mitochondrion is an essential organelle capable to produce high amounts of energy from oxidative phosphorylation (OXPHOS). The organelle counts on its own set of mitoribosomes and quality control (QC) factors to efficiently translate the OXPHOS components encoded by the mitochondrial DNA. Organelle dysfunction leads to development of mitochondrial diseases, which show a wide variety of symptoms and poor prognosis. ybeY is a highly conserved gene amongst prokaryotes that acts as factor for maturation and QC of bacterial ribosome. The ybeY-homolog C21orf57 is found remarkably conserved in eukaryotes, but its role in mammalian cells is completely unknown. In this study we characterised the mouse gene C21orf57 (mYBEY) in mammalian cells. mYBEY is transcribed at low levels in mouse tissues, where nervous tissue, skeletal and cardiac muscle show relatively higher amounts of mYBEY transcript. Endogenous mYbey protein could not be detected immunoblot due to its low expression level and/or rapid protein turnover. In parallel, mYBEY was cloned and successfully expressed in mammalian cells using transient and stable expression methodologies. We discovered that mYbey is imported into mitochondria and not covalently associated with mitoribosomes. Interestingly, protein translation stress and mitoribosome decay promoted by actinonin treatment is accompanied by a decrease in mYbey protein. In addition, depletion of mYbey using iRNA promotes the accumulation of mitoribosome proteins. We hypothesise a model in which mYbey is part of a QC mechanism for mitoribosome, and possibly involved with mitoribosome turnover. Although we successfully deleted mYBEY gene in mouse embryonic fibroblasts using the CRISPR/Cas9 approach, the isolation of viable mYBEY knock-out cells was not possible due to the possible deleterious and/or suppressive effects. In conclusion, we verified for the first time that mYbey is located within mammalian mitochondria and may be involved in a possible QC mechanism as a factor recruited for mitoribosome turnover. Further studies are necessary to fully elucidate the role of mYbey in the mitochondrial context.
  • Laine, Katarina (2015)
    Objective of this article was to analyze whether the reporting of the 3rd and 4th degree obstetric anal sphincter injuries differ between the patient data recording systems. The study was retrospective. The setting included all six delivery units in the Hospital District of Helsinki and Uusimaa (HUS) comprising one third of all deliveries in Finland. Population was all deliveries in HUS in 2012 (n=18099). The incidence of the sphincter injury was extracted from three electronic medical record (EMR) systems (Obstetrix, Opera and Oberon), using the national versions of International Classification of Diseases 10th revision (ICD10) and the Nordic Classification of Surgical Procedures (NOMESCO). All observed cases were studied carefully from the patient records and the reliability of different systems was analyzed and compared to the data reported to national registers (MBR Medical Birth Register and HDR Hospital Discharge Register). Main outcome measure was sphincter injury rate in delivery units. We found that the actual rate of sphincter injury in all the EMRs combined in HUS was higher (1.8%) than the rate delivered from any single reporting system (from 1.5% to 1.7%) and varied even more among single delivery units. The coverage in the MBR (88%) was much higher than in the HDR (3%). In conclusion the simultaneous use of several patient data recording systems is confusing and prone for systematic errors. One common database – preferably an EMR with a structured format - would clarify the registering and enable reliable quality reports creating a sustainable base for quality improvements.