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Browsing by department "Elintarvike- ja ympäristötieteiden laitos"

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  • Le, Thanh Ngoc Uyen (2017)
    The aims of this study were to use the heterologously expressed laccase in Pichia pastoris as oxidative biocatalysts for the degradation of BPA and to find out natural mediators that could assist this laccase to degrade BPA efficiently and environmental friendly. In addition, removal of the estrogenic activity of BPA by the white rot fungus Physisporinus rivulosus cultures and the role of its laccase 2 in the BPA disapperance was also focused. Firstly, the removal of BPA’s estrogenic activity by the white rot fungus Physisporinus rivulosus was confirmed in cultures both with and without the fungal mycelium. Next, the recombinant laccase 2 (rLac2) played a role in the BPA disapperance. At the similar laccase activity level, removal of BPA’s estrogenic activity was done more efficiently in the fungal cultures than in the cell-free enzymatic treatments. Metabolites present in the fungal cultures could possibly act as natural mediators that enhance the removal of BPA. In addition, combination of nine laccases present in the fungal cultures could possibibly enhance the degradation of BPA. Finally, none of the ten mediatiors used was found to act as an efficient rLac2 enhancer in degrading BPA. Degradation of BPA was followed using a bioreporter system. The yeast Saccharomyces cerevisiae has been genetically modified in order to express the estrogen receptor alpha and produce a bioluminescent signal upon contact with estrogenic substances such as BPA. This bioreporter system has been further developed to specifically detect the estrogenic activity of bisphenol A and to be used in a high-throughput manner.
  • Mahne, Hanna (2018)
    The present literature was reviewed to understand the recent indications of lipid degradation affecting β glucan molecular weight in aqueous solutions, the main topics being oat lipid reactions, oat β glucan, and oat bran/β glucan fortified yogurts, as well as the possible interplay of these three. A non-heat treated, a heat treated, and a heat treated and defatted oat bran concentrate (OBC) were produced, all with ~20% β glucan. OBCs were subjected to a storage trial in dark for 0–12 weeks at 4, 22 and 40 °C. Lipid degradation was followed during storage by assessing volatile compounds (HS-SPME-GC-MS), neutral lipid classes (NP-HPLC-ELSD) and tocopherol and tocotrienol levels (NP-HPLC-FLD) as well as β glucan molecular weights (HP-SEC). Acid milk gels were prepared as a model system for yogurts with added OBCs, and analysed for spontaneous and forced syneresis and textural changes. Lipid oxidation was observed in all OBCs, and hydrolysis in the non-heat treated OBC, but no changes in β glucan molecular weight were observed in the dry stored OBCs. OBC addition caused structural changes in an acid milk gels, the water retaining properties were improved, and the gels were softer and smoother than without added OBCs. Time and temperature affected OBC lipid oxidation and hydrolysis behaviours. Adding OBCs to gels changed gel textures compared to both without vs. with OBCs and adding fresh vs. stored OBCs.
  • Rotikko, Johanna (2012)
    The literature review dealed with the production of, and factors affecting the optimal processing of, traditional sauce base. Aspects of manufacturing relating to recycling and energy, such as recycling of animal by-products, were also discussed. The aim of the experimental work was to find a solution for the problem related to the opacity of the meat stock caused by a pressure cooking method. The key aim was to find the causes of opacity when the bones were pressure cooked (up to 1.5 bar) and to identify a method to prevent the occurrence of turbidity. Different cooking times, pressures and proteolytic enzyme combinations were evaluated during experimental studies. The goal was to obtain a beef-flavoured demi-glace sauce base broth with a bright appearance and as high a dry matter content as possible. Dry matter, total protein and connective tissue protein concentrations, pH and turbidity values were evaluated when comparing the results of the manufacturing methods and conditions. In addition, potential methods to improve the heat recovery systems were investigated. The dry matter of the broth consisted mainly of proteins. There was slightly faster increase in dry matter concentration at higher pressure than lower pressure. Addition of the proteolytic enzyme had the same effect. Based on this study the broth manufacturer must choose between a high gelatin content and turbidity when pursuing high dry matter content. The dry matter hydrolysed from bones by pressure cooking was almost exclusively collagen. Collagen dissolved in water while the rest of the bone proteins precipitated when heated. The construction of the heat recovery system in a small food processing company may be unprofitable. Improving energy efficiency in a small food company is challenging but possible if professionals accurately evaluate the conditions.
  • Leinonen, Sara (2019)
    The literature part of the study reviewed the recommended gluten quantification method, immunological ELISA R5. R5 is a monoclonal antibody that recognizes mainly the epitope that is abundant in especially gluten protein subgroup, ω-gliadin. The current PWG-gliadin reference material used in ELISA leads to inaccuracy of the gluten content, because it cannot represent sample materials that differ in their gliadin composition. The aim of the experimental study was to compare the prolamin compositions of different wheat cultivars and their reactivity against R5 antibody in sandwich ELISA. The aim was to find the most suitable ratio of barley prolamin, C-hordein, to be used as a reference material for wheat gluten quantification. The ω-gliadin proportions of different cultivars were calculated from RP-HPLC-chromatograms. In order to compare the total wheat gluten reactivity of the cultivars in ELISA R5 with gliadin standard and C-hordein in different ratios (10, 20 and 30% in BSA), Km-values that measure the rate of sensitivity in the assay, were calculated. The method to separate gliadin- and glutenin subgroups in RP-HPLC was optimized (solvent to extract gliadin and glutenin, temperature, injection volume, gradient). For cv. Crusoe the ω-, α/β- and γ-gliadins and HMW- and LMW-glutenins were identified. The selected wheat cultivars were categorized into four groups. The proportion of ω-gliadin in total gliadin ranged from 0.8 to 14.1% between the cultivars, whereas for PWG-gliadin this has been reported to be 7.7%. In terms of similar reactivity (Km-value) in ELISA, 20% C-hordein was found to be the most suitable reference material (Km 90) for the selected wheat cultivars (Km average 92), instead of the current gliadin standard (Km 68). The advantage of C-hordein standard is that the concentration and thus reactivity can be adjusted to match the sample materials with different prolamin profiles. Unlike with current gliadin reference material, it can be used without any conversion factors, which improves the method accuracy.
  • Pasupulate, Avinash (2015)
    The aim of this study was to develop and apply a high throughput and cost effective method for screening food samples for antibiotic contamination. This method can be used to reduce the number of samples that have to be analysed using expensive chemical methods that are at currently being used for determining antibiotic concentrations. The primary objective of this study involved the construction of a macrolide sensitive bacterial bioreporter, which can be used to detect the levels of macrolide antibiotics in meat samples. The bioreporter was constructed by merging a macrolide promoter region to a bioluminescent signalling gene like the lux operon, this fused segment was then cloned into a suitable vector and transformed to a host E. coli along with the repressor (producing) plasmid. The bioreporter works in the presence of macrolides, when the repressor protein is released from the promoter region, resulting in the expression of the lux operon, which produces light. This light signal can be used for the detection and estimation of macrolide antibiotics using a luminometer. The secondary objective was to use the macrolide bioreporter along with a previously constructed tetracycline bioreporter to measure antibiotic concentrations in bovine meat samples acquired from EVIRA (Finnish Food Safety Authority). On analysis of the resulting luminescence data, calculated concentrations of oxytetracycline were found to be in correlation to the data acquired from EVIRA and also using solid meat samples in assays, instead of extracted muscle fluid produced more accurate results. This shows the usability of bioreporters in the detection of antibiotics in animal-based foods from different sources. The resulting data can also be used to monitor and control the spread of antibiotic resistance through animal farms.
  • Koirala, Prabin (2018)
    The current multidisciplinary interests on human intestinal microbiomes have stimulated large scale research initiatives, involving collection and processing of up to thousands of fecal samples within a single study. Hence, there is a need for high throughput protocols that are cost-efficient and validated for their performance to ensure that the relative abundance of different bacteria, the main outcome of microbiota studies, is not biased due to technical artefacts originating from sample processing. Infant’s microbiota colonization is one of the central research areas in human microbiome research because of the long-lasting and profound health implications of the pioneering microbes. This experimental study aimed to develop and validate a high throughput fecal sample collection and processing system for microbial DNA extraction operating in 96 well format. This newly developed method was used to extract DNA from 647 fecal samples collected from mother-infant pairs within a clinical study that will study the effect of antenatal antibiotic prophylaxis on infant’s gut microbiota development. A subset of 28 mother-infant pair samples (14 from each antibiotic and non-antibiotic groups) were selected to study the prevalence of a probiotic bacterium, Lactobacillus rhamnosus GG (LGG), among infants and their mothers longitudinally from birth to 3 months by using species-specific PCR amplification method targeting sortase C gene. In addition, the prevalence of L. rhamnosus GG in 3-month-old infants was compared between the above samples and those (n=30) collected in another clinical trial conducted ~10 years earlier. From extensive testing and validation, an efficient high throughput system for fecal sample collection and processing for extraction of microbial DNA in 96 well format was established. Tests were performed to validate the performance of a) fecal sample collection system b) commercial, readymade bead beating tubes for bacterial cell lysis and c) selfmade wash buffers as part of the automatic DNA purification system. Performance was evaluated based on the quality and quantity of the resultant DNA. We show that this new fecal processing system can yield high quality microbial DNA from 96 fecal samples within ~6 hrs. Based on the ratios of dominant gram-positive and gram-negative bacteria evaluated using PCRs and next generation sequencing, the new DNA extraction method resulted into similar microbiota composition than the previously validated manual DNA extraction method. However, the DNA yield per sample was markedly lower due to the lower input volume of the sample. Based on the sortase C gene PCR tests, the prevalence of LGG was similar (~60%) among 3-month-old children in both clinical studies conducted ~10 years apart, although false negatives among the recent samples due to the low amount of DNA cannot be excluded. Following the temporal pattern of colonization, we observed no evidence for the transfer of LGG at the time of birth from the mother to her child, instead the infants became positive for LGG typically between 1-3 weeks after birth. The carriage of LGG seemed to be dependent on their diet. During this project, we found out that the PCR method employed for detection of LGG was not fully specific for this strain, and hence a more specific qPCR assay was developed.
  • Syvähuoko, Jenna (2015)
    The literature review focused on the chemical properties of Fusarium mycotoxins and their masked forms, analytical methods for their determination and the toxicological and legislative aspects. In the experimental study, a multi-method was developed and validated for the simultaneous quantification of several Fusarium toxins and their masked forms in barley, oats and wheat using liquid chromatography-tandem mass spectrometry (LC-MS/MS) technique. The simple “dilute-and-shoot” sample preparation procedure was applied, where the extraction was performed with a mixture of acetonitrile, water and acetic acid (79:20:1, v/v/v). Moreover, the aim was to obtain new data on the occurrence of the masked mycotoxins in barley, oats and wheat by analysing 95 cereal grain samples. The type A trichothecenes T-2 and HT-2 toxins (T-2 and HT-2) and the type B trichothecenes deoxynivalenol (DON) and nivalenol (NIV) as well as zearalenone (ZEN), together with 11 masked forms of them, were included based on their importance for the food safety in northern Europe. The analytes were separated on a reversed-phase column and detected in selected reaction monitoring (SRM) mode. Better peak shapes for the early eluting compounds and shorter analysis time were obtained with acetonitrile than methanol as the organic phase, thus it was chosen for the method. The method was validated according to the criteria set in the legislation. The limits of quantification varied from 0.3 to 15.9 ?g/kg. The recoveries were 92?115%, thus being within the tolerable ranges established in the legislation. The inter-day precisions (4?27%) were under the maximum permissible values. Therefore, the method proved to fit for the purpose. In this study, occurrence data on the masked mycotoxins in Finland were obtained for the first time. The presence of ZEN-16-glucoside (ZEN-16-G) and NIV-3-glucoside (NIV-3-G) were reported for the first time worldwide in some of the cereals. The most frequently found toxins were DON, NIV and HT-2. All of the masked mycotoxins included in the method were determined, the most common being DON-3-glucoside (DON-3-G), HT-2-glucoside (HT-2-G) and NIV-3-G.
  • Rekola, Kristiina (2015)
    Chemical composition of oats and its suitability for baking were reviewed in the literature part. The special features of baking without gluten and possibilities to increase the quality of gluten-free bread were also discussed. The aim of the experimental research was to develop high protein gluten-free oat-based bread. The effect of different protein concentration on structural, textural and sensory properties of gluten-free oat bread was studied. Also the effect of processing method on bread quality was studied by using sourdough technology and straight dough technology. Gluten-free oat bread recipe and baking protocol as well as sourdough fermentation conditions were optimized on the basis of preliminary trials. Oat-based breads with varying protein content were baked by using straight dough and sourdough technologies. Reference sample was oat-based bread without added protein. Specific volume, moisture content, texture profile analysis (crumb hardness, chewiness and resilience) and starch retrogradation of gluten-free breads were analysed. For shelf life measurements, breads were stored in plastic bags at room temperature from 1 to 3 days. Sensory profile of bread samples were evaluated on the day of baking by a trained panel. Descriptive analysis method was used. Palatable high protein gluten-free oat-based bread was obtained in this study. Increasing amount of protein improved the crumb structure and shelf life of gluten-free breads. All of the protein supplemented breads had agreeable sensory profile. Sourdough did not further improve the quality of high protein gluten-free bread except for increased aroma intensity. Oats and its fractions can be successfully applied as an ingredient for gluten-free baking to enhance the nutritional quality.
  • Tuomiranta, Petra (2018)
    Glucuronoyl esterase (GE) is an enzyme produced by plant biomass degrading basidiomycete and ascomycete fungi. GEs have been found to hydrolyse a specific ester bond between lignin alcohols and xylan hemicellulose, which is one of the crosslinks in plant biomass. GEs are the only known enzymes capable of hydrolysing both glycosidically bound and free methyl esters of 4-O-methyl-D-glucuronic acid. In biodegradation of plant biomass, fungal GEs are assumed to cleave the bonds between aromatic lignin alcohols and 4-O-methyl-D-glucuronic acid of hemicellulose. Due to these characteristics, GEs are promising candidates for future industrial applications, such as biofuel production. The genome of white-rot bacidiomycete Dichomitus squalens contains two GE encoding genes. The aim of this work was to express one wild-type GE from D. squalens, DsGE1, and its site-directed mutants as recombinant proteins in the yeast Pichia pastoris. The catalytic activity of the wild-type and mutated recombinant DsGE1 enzymes was examined in optimum conditions with synthetic benzyl glucuronate as a substrate. Recombinant GEs were then exposed to varying of temperature and pH values as well as organic solvents. The aim was to assess whether the mutated DsGE1 enzymes retained a higher GE activity than the wild type enzyme in the tested conditions. Hypothesis of this work was that mutated recombinant DsGE1 enzymes catalyse the hydrolysis of a synthetic benzyl glucuronase. The mutated enzymes were expected to have improved thermal resistance in temperatures higher to the optimum when compared to the wild-type GE. In addition, another hypothesis was that the DsGE1 mutants retain their specific activity better than the wild-type enzyme when pH changes from optimum as well as when the enzymes are exposed to organic solvents. The first research hypothesis was confirmed, while the results of the work disproved the following two hypotheses.
  • Kangas, Suvi (2013)
    Background: Cancer is the leading cause of death worldwide, claiming 7.6 million lives a year. Five behavioural factors have been recognised to be responsible for 30 % of the disease burden. Among them is low fruit and vegetable consumption. Fruit and vegetable consumption has been inversely associated with cancer risk but the mechanisms behind this effect are still largely debated. Dietary antioxidants present in large quantities in plant foods have been hypothesised to contribute to this protection. Objective: The aim of this study was to investigate the relationship between dietary total antioxidant capacity (TAC) and overall cancer incidence. This was done applying a new antioxidant measurement that reflects the whole set of direct antioxidant reducers (vitamin C, alpha-tocopherol, carotenoids and flavonoids) present in diet. The average TAC intake levels of the participants were assessed and the main dietary contributors to the TAC scores were examined. Subjects: Study subjects included 67 634 middle aged French women participating in an on-going prospective cohort study called E3N. Their dietary assessment was made between June 1993 and July 1995 using a semi-quantitative food frequency questionnaire able to quantitatively and qualitatively assess the average daily intake of 208 different foods, recipes and beverages. Cancer cases were self-reported and validated against medical records. The follow up of the participants ended in May 2008. Methods: Four different total antioxidant capacity scores were created using two different TAC methods, the ferric reducing ability parameter (FRAP) and the total radical-trapping antioxidant parameter (TRAP), and including or excluding coffee from the dietary TAC calculation. Coffee exclusion was justified with the fact that it is the largest contributor to the dietary TAC intake, and because of its association with some negative lifestyle behaviours, it can act as a confounder even if adjustments are made. Statistical analyses for cancer risk according to dietary TAC intake were made using Cox proportional hazards model adjusting for energy intake without alcohol, tobacco smoking, alcohol intake, BMI, physical activity level, educational background, region of residence and family history of cancer. Results: When coffee was included in the dietary TAC scores a significant but modest increase in cancer risk was observed towards higher TAC intakes (p for trend < 0.05 for both FRAP and TRAP). On the contrary, when coffee was excluded from the TAC scores a significant although modest decrease in overall cancer risk was observed (p for trend = 0.016 for both FRAP and TRAP without coffee). In the indexes where coffee was included in the score it contributed up to 43 % and 76 % of total FRAP and TRAP scores respectively. After coffee the main contributors to dietary TAC intake were tea, wine, fruits, vegetables, fruit juice and chocolate. The mean daily intake of TAC was 20.5 mmol of FRAP and 20.2 TE of TRAP in the scores including coffee. When coffee was excluded from the scores, the mean intake levels dropped to 9.4 mmol and 4.9 TE. Conclusion: Dietary total antioxidant capacity was associated with a statistically significant but modest decrease in cancer incidence when intake of coffee, the main TAC source, was not taken into account. Coffee seems to be acting as a confounding factor since when it was included in the TAC scores, there was a small but statistically significant positive association with cancer risk. For future studies it would be crucial to standardise the TAC methods so that comparisons between studies could be made. On the other hand in vitro nature of the TAC methods should be kept in mind; a fact that challenges the interpretation of the results from the biological perspective.
  • Song, Yue (2018)
    Highly glycemic index of wheat bread causes rapid increase of blood glucose level which is harmful for people with chronic diseases such as type II diabetes and obesity. Consumption of whole grain bread rather than bread from refined wheat flour is an alternative way to reduce the risk of chronic disease. In Africa, the occurrence of chronic diseases is on the rise and therefore alternative products based on whole grain flour are needed. Furthermore, due to climate change the smart solution would be to utilize flour from cereal grains that are produced locally rather than being imported. Fonio is one of the oldest cereal in West Africa. Gluten-free fonio is always consumed as whole grain flour which is beneficial for digestion and cardiovascular function. Sourdough fermentation is known as a processing that can influence starch and protein digestibility in bread making. Moreover, sourdough is needed to enhance the quality of whole grain fonio bread. Utilization of sourdough fermentation is a potential method to improve the texture, sensory and nutritional qualities of bread. The aim of this thesis work is to evaluate the protein and starch digestibility of wheat bread with 40% whole grain fonio sourdough. In this study, breads were prepared and used for protein and starch digestibility studies. Freeze-dried samples were used for total starch and protein contents analysis. Moisture content of the breads was also analyzed to calculate the weight of samples needed for in vitro starch and protein digestibility. Pancreatic amylase was used to determine the starch in vitro digestibility. Breads with 1g starch were incubated at 37℃ with continuously shaking after which the reducing sugar content was determined. Glycemic index was calculated based on the starch hydrolysis percent. Protein in vitro digestibility was measured by pepsin and pancreatin. Breads were incubated at 37℃ with constantly shaking. The un-digested protein was determined by Dumas method. The protein digestibility was calculated with the total protein content. Phytate content was tested by the phytate content kit from Megazyme. Compared to wheat bread, fonio breads all had lower starch digestibility. This phenomenon was mainly caused by the wholegrain which increases the content of dietary fiber and enzyme inhibitors. For sourdough bread, there was a slight decrease of starch hydrolysis percent compared to control fonio bread. Sourdough enhanced the solubility of dietary fiber which therefore increased viscosity of chyme. Higher viscosity of chyme affects the glucose uptake and enzyme contact which consequently contributed to reduction of starch digestibility. Furthermore, the produced organic acids especially acetic acid may contribute to the lower starch digestibility of sourdough bread. Glycemic index of sourdough fonio bread was the lowest one among all the bread samples. For protein digestibility, fonio breads all had lower protein digestibility compared to wheat bread. However, there was an increase of protein digestibility by sourdough fonio bread. LAB protein metabolism to get enough nitrogen resources may explain this. The lower content of phytate in sourdough fonio bread may also influence the protein digestibility. In conclusion, sourdough fonio bread has lower starch digestibility than wheat bread and can enhance protein digestibility compared to fonio bread without sourdough.
  • Lahti, Mari (2017)
    Introduction: The importance of good nutrition is not always recognized among athletes and their coaches. Young athletes need professional guidance, so they can learn how to execute dietary practices that support their athletic performance and overall well-being. The growing body of scientific evidence on performance enhancing nutrition and its practical applications challenges the Finnish field of competitive sports to invest in professional nutrition coaching among athletes. Aims of the study: The aim of this study was to examine, if eating habits of young endurance athletes can be influenced by a nutrition intervention carried out using a mobile application (MealLoggerTM) with an inbuilt nutrition program. We also examined, whether the motivation towards sports and nutrition and the perceived competence for following a certain diet are related to athletes’ adherence to the nutrition program and to the measured changes in food intake. Materials and methods: 17 young individual endurance athletes followed through a four-week nutrition intervention by keeping a photo food journal and logging their food servings with the smart phone application MealLoggerTM. A common application inbuilt nutrition program with servings goals for different food groups was designed in advance and implemented after a group education session on optimal sports nutrition. During the intervention period, the participants received real-time feedback from the mobile application on their adherence to the nutrition program. In addition, individualized meal photo comments were provided by a nutritionist three times a week. The athletes also received common weekly motivational messages through the application. Food intake was measured at baseline, after the intervention and 8-weeks after the intervention using food frequency questionnaire (FFQ). The motivation and perceived competence were assessed with Self-Determination theory (SDT) questionnaires. The adherence to the nutrition program was assessed by comparing the logged food servings to the defined nutrition goals. Results: Twelve participants (71%) completed the post-intervention questionnaires. No statistically significant changes in consumption of food groups included in the nutrition program were detected. The consumption of berries increased 2,36 times per week (SD 4,07 p=0,049). The consumption of skimmed milk decreased 3,00 times per week (SD 4,28, p=0,042) and the consumption of milk/alternatives in total decreased 3,67 times per week (SD 5,82, p=0,034). MealLoggerTM data was retrieved from 15 participants. Most of the participants (n=8) with high adherence (H) achieved at least 3 out of 4 goals on every week. Most participants (n=7) with low adherence (L) failed to achieve any of the nutrition goals on any of the four weeks. No statistically significant differences in motivation or perceived competence were found between the H and L. The overall engagement to the mobile application was lower in L compared to H. The participants in L were mostly female, significantly younger and more likely to be living with a guardian, responsible for the acquisition and preparation of food. Discussion: Despite detecting only small dietary improvements, the application showed good feasibility and acceptability among the high adherence participants. In the future, to provide more effective nutrition coaching an appropriate baseline assessment should be included. The goals of the nutrition program should be adjusted according to the athletes’ individual needs. More democratic coaching styles, with parental involvement should be explored in order to increase engagement and adherence of young athletes.
  • Klingenberg, Daniela (2011)
    The bacterial genus Stenotrophomonas comprises 12 species. They are widely found throughout the environment and particularly S. maltophilia, S. rhizophila and S. pavanii are closely associated with plants. Strains of the most common Stenotrophomonas species, S. maltophilia, promote plant growth and health, degrade natural and man-made pollutants and produce biomolecules of biotechnological and economical value. Many S. maltophilia –strains are also multidrug resistant and can act as opportunistic human pathogens. During an INCO-project (1998-2002) rhizobia were collected from root nodules of the tropical leguminous tree Calliandra calothyrsus Meisn. from several countries in Central America, Africa and New Caledonia. The strains were identified by the N2-group (Helsinki university) and some strains turned out to be members of the genus Stenotrophomonas. Several Stenotrophomonas strains induced white tumor- or nodule-like structures on Calliandra?s roots in plant experiments. The strains could, besides from root nodules, also be isolated from surface sterilized roots and stems. The purpose of my work was to investigate if the Stenotrophomonas strains i) belong to a new Stenotrophomonas species, ii) have the same origin, iii) if there are other differences than colony morphology between phase variations of the same strain, iv) have plant growth-promoting (PGP) activity or other advantageous effects on plants, and v) like rhizobia have ability to induce root nodule formation. The genetic diversity and clustering of the Stenotrophomonas strains were analyzed with AFLP fingerprinting to get indications about their geographical origin. Differences in enzymatic properties and ability to use different carbon and energy sources were tested between the two phases of each strain with commercial API tests for bacterial identification. The ability to infect root hairs and induce root nodule formation was investigated both using plant tests with the host plant Calliandra and PCR amplification of nodA and nodC genes for nodulation. The PGP activity of the strains was tested in vitro mainly with plate methods. The impact on growth, nitrogen content and nodulation in vivo was investigated through greenhouse experiments with the legumes Phaseolus vulgaris and Galega orientalis. Both the genetic and phenotypic diversity among the Stenotrophomonas strains was small, which proposes that they have the same origin. The strains brought about changes on the root hairs of Calliandra and they also increased the amount of root hairs. However, no root nodules were detected. The strains produced IAA, protease and lipase in vitro. They also showed plant a growth-promoting effect on G. orientalis, both alone and together with R. galegae HAMBI 540, and also activated nodulation among efficient rhizobia on P. vulgaris in greenhouse. It requires further research to get a better picture about the mechanisms behind the positive effects. The results in this thesis, however, confirm earlier studies concerning Stenotrophomonas positive impact on plants.
  • Hyvärinen, Heini (2010)
    Johdanto: Ikääntyessä iholla tapahtuva D-vitamiininmuodostus heikkenee ja lihakset ja luusto haurastuvat. Heikko lihaskunto on yhteydessä kaatumisriskiin, ja kaatuminen on yleisin syy vanhusten murtumiin. Monissa tutkimuksissa on osoitettu, että luustovaikutustensa lisäksi D-vitamiinilla on vaikutuksia luurankolihakseen. D-vitamiinihoidon on osoitettu vähentävän kaatumisia, mikä saattaa osin selittyä parantuneen tasapainon kautta. Joissakin tutkimuksissa on havaittu heikko tilastollinen yhteys Dvitamiinin ja kroonisen kivun välillä. D-vitamiinin puutokseen liitettyjä kipuja on esitetty luustoperäisiksi, mutta D-vitamiinin lihasvaikutukset huomioiden ne saattavat olla ainakin osin lihasperäisiä. Tavoitteet: Tämän poikkileikkaustutkimuksen tavoitteena oli tutkia, onko seerumin 25-hydroksi-Dvitamiinipitoisuus (25OHD) yhteydessä lihastoimintoihin itsenäisesti kotona asuvilla reumatauteja sairastavilla yli 50-vuotiailla. Hypoteesina oli, että D-vitamiinin puutos on yhteydessä heikentyneisiin neuromuskulaarisiin lihastoimintoihin, joita tässä tutkimuksessa mitattiin tasapainon perusteella. Aineisto ja menetelmät: Tutkimukseen rekrytoitiin yli 50-vuotiaita, koska tässä kohderyhmässä lihastoimintojen heikentymisen ja D-vitamiinin puutoksen odotettiin olevan yleisiä. Tutkittavien tuli kuitenkin olla kohtalaisen hyväkuntoisia, jotta he jaksaisivat fyysiset testit ja tutkimuksen mahdollisesti aiheuttaman henkisen rasituksen. Siksi lihastoimintojen ongelmia kuvaamaan valittiin polymyalgia rheumaticaa sairastavia, itsenäisesti kotona asuvia ihmisiä. Tutkimukseen osallistui myös joitakin yli 50- vuotiaita fibromyalgiaa ja nivelreumaa sairastavia henkilöitä. Seerumin 25OHD-pitoisuus määritettiin EIA-menetelmällä (IDS, UK). D-vitamiinin yhteyttä tutkittiin tasapainoon (Rombergin vakio tasapainolevyllä) ja lihasvoimaan (puristusvoima molempien käsien parhaan tuloksen keskiarvona, jalkojen nopeusvoima hyppylevyllä), kipuun ja toimintakykyyn. Tilastomenetelminä käytettiin ristiintaulukointia, t-testiä, lineaarista regressiota, logistista regressiota ja Pearsonin korrelaatiota. Tulokset: Tutkimukseen osallistui 47 henkilöä, joista viisi oli miehiä. Potilaat olivat 53-81 -vuotiaita (keski-ikä 70 v) ja hieman ylipainoisia (BMI 28). 25OHD oli keskimäärin 64 nmol/l. Ravitsemustila oli keskimäärin hyvä (MNA-pisteet 24). 25OHD oli alle 50 nmol/l 32 %:lla ja vastaavasti alle 75 nmol/l 74 %:lla tutkittavista. Potilaista 83 % käytti D-vitamiinivalmistetta. 25OHD korreloi positiivisesti ravitsemustilan (MNA) ja käänteisesti tasapainon ja kiputiheyden kanssa. 25OHD, ikä, sukupuoli ja MNA-pisteet selittivät 13,9 % (adjusted r2) huojunnan vaihtelusta ja 14,5 % (r2 Cox & Snell) kiputiheyden vaihtelusta. Ainoastaan 25OHD-pitoisuudella oli tilastollisesti merkitsevä itsenäinen selitysosuus huojuntaan (p = 0,024) ja kiputiheyteen (p = 0,045). Niillä, joilla 25OHD oli vähintään 75 nmol/l, oli 83 % pienempi riski kärsiä päivittäisestä kivusta kuin niillä, joilla 25OHD-pitoisuus oli alle 75 nmol/l. Lihasvoimalla, lihasmassalla ja kivun voimakkuudella ei havaittu yhteyttä D-vitamiinistatukseen. Johtopäätökset: Tässä tutkimuksessa reumatauteja sairastavien yli 50-vuotiaiden potilaiden matalat 25OHD-pitoisuudet olivat yhteydessä tasapainovaikeuksiin ja päivittäisiin kipuihin. Lihasmassa ja lihasvoima eivät olleet yhteydessä D-vitamiinistatukseen. Löydösten pohjalta olisi tulevaisuudessa tarpeen tutkia tarkemmin D-vitamiinikorvaushoidon vaikutuksia tasapainomittareihin ja kiputiheyteen.
  • Wu, Qimeng (2015)
    The literature review deals with water distribution in meat, the structure of the myofibrillar matrix, and the aspects related to the water-protein interaction. Special focus was given to the large water accessible area of myosin S1 units, surface hydrophobicity of proteins and factors affecting the hydrophobicity. Also the possible mechanisms of water-holding in meat were briefly introduced. The aim of the thesis was to study the effect of different ions and pH values on the surface hydrophobicity of the myosin S1 units, adding knowledge to the understanding of the interaction between myosin S1 units and water. Myosin S1 units were prepared from porcine longissimus dorsi muscle 48 h postmortem. Obtained myosin S1 units were subjected to 0.2 M, 0.4 M and 0.6 M ionic strength of NaCl and KCl and to pH 5.0, 5.5, 6.0, 6.5 and 7.0. The surface hydrophobicity of myosin S1 units was measured by fluorescent molecular probe (cis-Parinaric acid) method. The method of purifying myosin S1 units from porcine longissimus dorsi muscle 48 h postmortem was established under the conditions of our laboratory. Surface hydrophobicity was found to increase with increasing ionic strength of both KCl and NaCl. Concerning the different ions studied, only at 0.6 M, significantly higher surface hydrophobicity of myosin S1 units was measured in KCl compared to NaCl. This phenomenon is in accordance with chaotropic effect of K+ and Cl- and kosmotropic effect of Na+. Regarding the effect of pH, within KCl samples, more hydrophobicity myosin S1 unit was detected towards to the more acidic direction pH values than pH 6.0. For NaCl samples, at pH 5.5 and 6.0, surface hydrophobicity was significantly higher than at pH 5.0, 6.5 and 7.0. Differences may have been induced by the changes in the net charges of protein, and further in protein conformation. Considering the property of the protein surface, more hydrophobic protein results in less water-protein interaction. However, to look at the whole scenario of the interaction between myosin S1 units and water, changes of net charges of myosin S1 units and water structure at vicinity of them should be further studied.
  • Sundarrajan, Lakshminarasimhan (2014)
    Amaranth, quinoa, kañiwa and lupine are good sources of protein, fat, dietary fibre and bioactive compounds. The literature review deals with the nutritional properties and the stability of bioactive compounds and the effect of extrusion cooking on amaranth, quinoa, kañiwa and lupine. The main aim of this study was to (1) chemically characterize amaranth, quinoa, kañiwa and lupine, and (2) to determine the effect of extrusion cooking on the nutritional properties and the stability of bioactive compounds. Extrudates were processed using twin screw extruder at two different extrusion temperatures (140 and 160 °C) containing two different contents of tested flour mixtures (20 and 50%). The raw materials and the extrudates were stored at -18 °C and chemically characterized to determine fatty acid composition, tocopherol composition and total phenolic acid content. Fatty acid composition was determined using GC while tocopherol composition was detected using HPLC. The total phenolic acid content was analyzed using Folin-Ciocalteu method. The protein and dietary fibre content in lupine accounted for 29 and 50 g/100 g d.m., respectively. The extrudates containing 50% lupine and processed at 140 °C possessed higher content of oleic, linoleic and linolenic fatty acids. At higher content of tested flours, extrusion cooking at 160 °C resulted in better retention of unsaturated fatty acids in the extrudates of amaranth, kañiwa and quinoa. Higher extrusion temperatures resulted in lower retention of tocopherols in all the extrudates. The total phenolic acid resulted in higher contents in the extrudates of kañiwa when compared to other extrudates. At higher seed contents of tested flours (%), higher retention of total phenolic acid was achieved during extrusion cooking at 140 °C in the extrudates of amaranth, quinoa and kañiwa. This study showed that extrusion conditions could be optimized in order to obtain lesser effects on the nutritional properties and better retention of bioactive compounds. The research study provides supportive information for obtaining gluten-free cereal snack products with lower glycemic index.
  • Lüüs, Helen (2009)
    The present study was conducted to test the effect of an essential oil blend containing thymol and cinnamaldehyde on chicken pancreatic enzyme activities. Essential oils are oils from plant origin and have become an important alternative in animal nutrition after the European Union banned the use of antibiotics as growth promoters. Some previous studies have indicated that essential oils may stimulate the secretion of digestive enzymes, and thereby have a positive effect on the digestion and absorption of nutrients (Windisch et al. 2008). Pancreas samples originated from 20- and 28-day old Ross male chickens, that were fed with wheat soybean diets supplemented (or not) with the essential oil blend. Optimization of the colorimetric assays for detecting the enzyme activities in the supernatants of pancreatic homogenates was carried out. The ?-amylase, trypsin, chymotrypsin and lipase activities were expressed as U per mg of protein. The activity results were compared with previously collected digestibility and performance results. The addition of the essential oil blend at the applied concentrations to chicken diet did not have a significant effect on the activities of the chicken pancreatic enzymes. Overall, the enzyme activities did not show strong correlations to chicken performance or nutrient digestibilities. However, there were significant differences (P < 0.05) in the lipase and trypsin activities between the 20- and 28-day old chickens. It can be concluded that the studied essential oil blend did not stimulate pancreatic enzyme activities at the tested conditions. However, further studies are needed to explain the effect of the dietary supplement of essential oils on chicken digestion.
  • Dominguez-Hernandez, Elisa (2015)
    The aim of this project was to study the physical and chemical changes in the myofibrillar protein fraction during low-temperature long-time (LTLT) heat treatment of pork, in relation to cathepsin activity and evolution of tenderness. Porcine Longissimus dorsi muscles were cut, vacuum packaged and cooked in water baths at 53, 58, 63, 68 and 73°C. The process was monitored at: 1, 8 and 24h. Allo-Kramer shear force (AKSF), residual activity of cathepsin B+L, surface hydrophobicity (SH) and particle size of myofibrils were measured. Results showed that toughness decreased markedly between 53°C and 63°C and later increased to 73°C. Toughness also decreased with time. Myofibrillar SH, increased with temperature, but not with time, indicating aggregation and/or gelation. Treatments with low AKSF had smaller particles, suggesting that meat was easier to break, both macroscopically and microscopically. The high associated catheptic activity could be the reason for the weakening of myofibrils. They also might be able to prevent their aggregation and transition into a hard compact gel. As temperature increases, denaturation-aggregation-gelation overcomes proteolysis and bigger particles were detected. In conclusion, LTLT sous-vide cooking (53 and 63°C) allows the control of short term changes in myofibrils (so they do not toughen) and permits the slow ones (proteolysis) to decrease toughness of prime cuts.
  • Stamm, Matthias (2015)
    Microalgae (MA) are a novel feed ingredient for dairy cows. They are an alternative high quality protein source and rich in polyunsaturated fatty acids (PUFA). Supplementation of MA in dairy cow feeds has a potential to increase the amount of beneficial PUFA and bioactive molecules in milk. Four multiparous Finnish Ayrshire cows fed grass silage-based diets were used in a 4 × 4 Latin square with 21-d experimental periods to evaluate the effects of various protein supplements on fatty acid composition, oxidative stability, milk fat globule size and phospholipid content of milk. Dietary treatments consisted of 4 concentrate supplements containing soya (control), or one of three MA supplements: (i) Spirulina platensis, (ii) Chlorella vulgaris or (iii) Chlorella vulgaris + Nannochloropsis gaditana. Inclusion of MA in the diet decreased saturated fatty acid (SFA) content in milk compared to soya and tended to increase monounsaturated fatty acid and PUFA concentrations in milk. MA supplements increased 4:0, 5:0, 6:0, 17:0, 18:1 + trans-15 18:1, and 18:3n-3. Among algae, Chlorella vulgaris lead to highest contents of PUFA and 18:2n-6, Spirulina platensis to highest contents in 14:0, 16:0 and 18:3n-6 and Chlorella vulgaris + Nannochloropsis gaditana to highest contents of 6:0, 20:0 and 20:5n-3 in milk. Oxidation stability and phospholipid content of the milk were not affected by treatment. Diets containing Chlorella vulgaris led to a decrease in the number of milk fat globules, but mean globule diameter (d4,3) and milk fat globule size distribution in terms of volume were unaffected by treatment. Additionally, effects of individual animals on milk fat globule size distribution and phospholipid contents have been shown. In conclusion, MA supplementation moderately increased the content of PUFA at the expense of SFA compared to soya. Enrichment of specific fatty acids depended on the fatty acid composition of the supplement and stronger alterations of milk fatty acid composition will require higher contents of algal fatty acids. Premature spoilage through oxidation was not an issue. Finally, MA fed in the current study could only slightly alter the milk fat globule distribution, but phospholipid contents remained unchanged.
  • Alam, Syed Ariful (2012)
    Oats are a good source of protein and dietary fibre, especially ?-glucan. Due to the health benefits of ?-glucan, oats have gained popularity in snack food formulations. The literature review deals with oats and its components, removal of lipids and fractionation of oat products. The particular emphasis of the literature review was given to studies on the effects of different oat fractions and extrusion process variables on the properties of oat-containing extrudates. The aim of this study was to find out how different oat fractions and extrusion process variables (screw speed, water content and feed rate) affect the physical and chemical properties of the extrudates. The measured physical properties were expansion, hardness and water content. Extrusion trials were carried out by using defatted oat endosperm flour (EF) as the main ingredient. Whole grain oat flour (WF) was used as a reference. To improve the nutritional quality, defatted oat protein concentrate (PC) and defatted oat bran concentrate (OBC) were added to EF. The oat fractions were defatted by supercritical carbon dioxide (SC-CO2). Pregelatinised corn starch (CS) and waxy corn starch (WS) were added in some trials to increase the expansion of the extrudates. A co-rotating twin-screw extruder was used for the extrusion. Different process variables were: water content of the mass (16, 18 and 20%), screw speed (240, 370 and 500 rpm) and feed rate (68, 76 and 84 g/min). The temperature profile of the extruder barrel was held constant in all of the trials: 40, 70, 70, 100, 110, 130 and 130 °C (sections 1 6 and die). Screw speed had significant effect on the expansion and hardness. Expansion increased and hardness decreased with increasing screw speed. Water content of the mass affected all the response variables in WF extrudates and all but not hardness and torque in EF extrudates. Increased water content of mass decreased the expansion and hardness in WF extrudates. Feed rate did not have significant effect on the physical properties. When using EF, more expanded and less hard extrudates compared to the WF were obtained. Addition of PC or OBC (10%) decreased the expansion and increased the hardness. Mixing of EF with corn starch (CS or WS; 30%) gave less hard and more expanded extrudates compared to pure EF. The highest expansion was achieved by the addition of WS. Even addition of OBC (20%) in a presence of WS (30%) gave highly expanded and less hard extrudates with high ?-glucan content 7.4% (dry weight). Decreasing the particle size of OBC (by ultra-fine milling) or the molecular weight of ?-glucan (by enzymatic hydrolysis) did not affect the physical properties of the extrudates even though small decrease in hardness was observed in the trial with enzyme-hydrolysed OBC. The results showed that defatted oat fractions can successfully be used in extrusion when mixed with corn starch. Screw speed had the most profound effect on the physical properties of the oat-containing extrudates followed by the water content of mass.