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Browsing by Subject "Orbitrap"

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  • Vinkvist, Netta (2024)
    Aerosol particles are a significant factor both environmentally and in terms of health. They can influence climate change in various ways: certain aerosol particles contribute to warming the atmosphere, while others may have a cooling effect. The concentration of secondary organic aerosol (SOA) in the atmosphere is significant, thus playing a crucial role in the climate. SOA can influence the temperature of the climate and the chemistry of the atmosphere. SOA are formed through the oxidation of volatile organic compounds (VOCs), creating a complex mixture of various less volatile organic compounds with diverse properties. Highly oxygenated organic molecules, products of VOC oxidation, are estimated to explain a substantial part of SOA formation. To assess the climate impacts accurately, it is essential to comprehend the characteristics of SOA in the atmosphere. The aim of the thesis was to investigate the influence of temperature and prefence of dimethyl sulfide (DMS) on the gas-phase oxidation products of VOCs, especially how temperature affects the formation of accretion products. The compounds and ozone reacted in a flow tube, and the resulting oxidation products were ionized by clustering them with reagent ions. The mass-to-charge ratio of the formed charged clusters was then measured with orbitrap mass spectrometer. Identifiable oxidation products were selected based on studies by Rissanen et al. [2014] and Tomaz et al. [2021], and the previously described products in these studies were followed using the Orbitool program. The starting materials used in this thesis were cyclohexene, deuterated cyclohexene, and limonene, which were oxidized in the presence of ozone. Several oxidation products were observed in the measurements that were expected to form based on literature. However, mass spectra also revealed that the reaction time with deuterated cyclohexene might have been too short. With a longer reaction time, the molecules could have undergone further oxidation, allowing better detection of oxidation products. In the thesis, it was observed that temperature influences the formation of oxidized products; as the temperature increases, oxidation reactions progress further in 2.7 s reaction time. Monomers that underwent more extensive oxidation could form more highly oxidized accretion products. DMS likely reacts with hydroxyl radicals, thereby influencing the oxidation of VOC compounds in the flow tube. Measurements conducted with DMS may result in the formation of more organic alkoxy radicals than organic peroxy radicals, which could undergo further oxidation.
  • Ikonen, Jani (2020)
    At the literary review, basic concepts of proteomics and mass spectrometry were covered. Different data-collection methods (DDA and DIA) were compared with each other including exploration of the possibilities of the DIA method. Characteristics of Fourier transformation mass spectrometry were discussed in detail beginning from the production of the protein spectra in FTMS instruments including features of the Orbitrap (hybrid) mass spectrometer. Features included modes of measurements, working principle, performance characteristics, operation modes and top-down experiments including large intact protein analysis (m/z range > 6000 Da). The working principles and performance in proteomic analyses of other mass spectrometer instruments were also briefly covered. Orbitrap MS instrumentation is compared with high-performance mass spectrometers including triple quadrupole, time of flight, ion trap, and Fourier transform ion cyclotron resonance (FTICR) mass spectrometers. Lastly, operation and coupling of the LC instrumentation to the Orbitrap mass spectrometer were also briefly discussed. The experimental part of the thesis covers development and feasibility testing of a quality control method for protein analysis studied with PierceTM Intact Protein Standard Mix by using microflow liquid chromatography-Orbitrap mass spectrometry combination. Development and testing of the method includes optimization of the method for dried sample, robustness testing with variable LC eluent concentrations, and the method performance with a heavily contaminated instrument compared with the performance of a clean MS instrument. Tested heavily contaminated instrument had more than 2000 injections of protein samples without cleaning. In the end, the developed protein analysis method was tested with nine different Q Exactive HF Orbitrap instruments to measure the instrument variation. In the studies, the average mass of analyzed proteins varied from 9111.47 to 68001.15 kDa The mass range used for identification was 500 – 2000 Da.
  • Partovi, Fariba (2021)
    Utilization of pesticides in the modern agriculture is often indispensable for gaining good crops. However, pesticides are abundantly being used in too hight quantities which leads to potential health risks for the consumers. Currently there are no pre-screening methods for monitoring the levels of pesticides in food, but only a negligible small percentage of all goods are being tested using the laborious standardized methods. This master’s thesis is an investigation, that was carried out in the wet laboratory of KARSA Oy Ltd, on 10 different pesticides: Glyphosate, Thiabendazole, 2-phenylphenol, Chlorpyrifos, Fludioxonil, Chlormequat, Bupirimate, Diflubenzuron, Fenpyrazamine and 2,4-dichlorophenoxyacetic acid. Pesticides were ionized using straight radiation chemical ionization (SRCI) in positive and negative modes without any added reagent and also using bromide, nitrate, acetonylacetone and acetone as reagents. Charged target molecules and adducts were detected using Thermo fisher Iontrap/Orbitrap (LTQ Orbitrap velos pro upgraded) mass spectrometer. After the initial method development and scoping measurements pesticides were studied both individually and as a mixture of all 10 pesticides. Sample solutions were first injected with syringe so that the solvent and targets evaporated at the same time inside the desorber heating block of SRCI inlet. In these syringe injection measurements, the desorber temperature was set at 150 °C. Mass range at 125–750 has been used for all the pesticides except for Chlormequat (100–750). After the syringe injection measurements, the mixture of 10 pesticides was analysed by TCM filters. Target solutions of 1 µl volume were placed on filters and after the solvents had evaporated the filters were heated from room temperature to 245°C using the same setup as with the syringe injections. In conclusion, with syringe injections 7 pesticides out of 10 were detected using positive and negative mode without any added reagent. The highest target intensities were recorded from TCM filters. Overall, applying the SRCI-Orbitrap setup for pesticide pre-screening from target solutions resulted in the detection of 9 pesticides out of 10.