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  • Oksanen, Marja (2022)
    Alcohol policy, alcohol legislation and alcohol consumption have a long history in Finland. For long, Finnish people have been seen as binge drinkers and harms caused by alcohol have been a true problem and burden for the public health. Still, alcohol is present in our everyday life. Therefore, there needs to be different ways to limit the consumption and related harms. This is where alcohol policy comes into action; its long history and the quite restrictive methods used in Finland have been generated for the welfare of the Finnish people and public health. Alcohol policy entails many aspects to consider. Discussing alcohol policy without taking into account such factors as self-regulation, alcohol culture and consumer practices leaves the discussion unilateral. The aim of this thesis is to identify what kind of policy measures were targeted when discussing the alcohol Act 2018 in the plenary session before voting about the Act. Also, the aim is to identify whether there was prejudice or stigma present in the discussion and how was alcohol culture taken into consideration when discussing the new act. In this study the focus is on alcohol culture and politics and therefore the research design of this study is qualitative. The material used in this research is a transcript of a plenary session held the day before the new Act was voted on. The method of analysis used to analyse the research material is directed content analysis. Still, it should be recognized, that this research is strongly related to rhetoric analyses as well. The debate in the plenary session was intense and strongly emphasized by personal opinions and arguments. The discussion many times shifted away from health policy to industrial policy which leaves open a question about the justification of alcohol policy in general. Stigma was present in the discussion and alcohol culture was referred to in a negative and positive sense. The nine target areas of alcohol policy were addressed, pricing and availability being emphasized more than other. The topic in general is part of a wider societal discussion and should be addressed from a wider perspective than alcohol policy alone.
  • Snellman, Mikael (2018)
    Today many of the most popular service provides such as Netflix, LinkedIn, Amazon and others compose their applications from a group of individual services. These providers need to deploy new changes and features continuously without any downtime in the application and scale individual parts of the system on demand. To address these needs the usage of microservice architecture has grown in popularity in recent years. In microservice architecture, the application is a collection of services which are managed, developed and deployed independently. This independence of services enables the microservices to be polyglot when needed, meaning that the developers can choose the technology stack for each microservice individually depending on the nature of the microservice. This independent and polyglot nature of microservices can make developing a single service easier, but it also introduces significant operations overhead when not taken into account when adopting the microservice architecture. These overheads include the need for extensive DevOps, monitoring, infrastructure and preparation for distributed system fallacies. Many cloud-native and microservice based applications suffer from outages even with thorough unit and integration tests applied. This can be because distributed cloud environments are prone to fail in node or even regional level, which cause unexpected behavior in the system when not prepared for. The applications ability to recover and maintain functionality at an acceptable level in these unexpected faults, also known as resilience, should also be tested systematically. In this thesis we give a introduction to the microservice architecture. We inspect an industry case where a leading banking company suffered from issues regarding resiliency. We examine the challenges regarding resilience testing microservice architecture based applications. We compose a small microservice application which we use to study the defensive design patterns and tools and methods available to test microservice architecture resiliency.
  • Räsänen, Mikko (2015)
    The conundrum between market entry and business development activities within innovation companies is generally regarded as a challenge. The energy industry as a whole is in a flux and the sustainable future requires drastic actions to be taken to reduce the effects of the global warming and in adaptation of a circular economy model. Using the industrial innovation company St1 Biofuels Oy as a case, this thesis will identify the decision-making components of an opportunity based target market analysis in a company, which operates in an industry with notable resource scarcity, policy regulations and variable business models. In response to this hypothesis, this study suggests an opportunity based target market analysis model that illustrates a new framework to study target markets in a systematic and analytical manner. For the purpose of the case with St1 Biofuels Oy, a market intelligence tool was created to store and process the market data and illustrate the most essential components of the theoretical model. The case study demonstrates the utilization of the opportunity model presenting the internationalization criteria and justification to a potential new R&D concept investment decision. The implications of this thesis contribute to the decision-making of the case and aid in demonstrating analytical justification for internationalization on a strategic decision-making level. This thesis introduces relevant literature to the topic and reflects the existing theories to the new model concept design. Structure and empiric base in this study were drawn together from two-stage data collection, including extensive market research and investment calculations along with semi-structured interviews with the specialists of the case company. The results of this thesis present a theoretical model and the functioning of the model is then piloted with the case study variables of St1 Biofuels Oy. Based on the discussion in this thesis, further research is suggested reflecting the model as a theoretical framework in strategic marketing planning and value-based selling studies.
  • Seppälä, Eemi (2019)
    Methane(CH4) is a powerful greenhouse gas and even though the CH4 concentrations in the atmosphere have been increasing rapidly since the year 1750, there still remains large uncertainties in the individual source terms to the global CH4 budget. Measuring the isotopic fractions from various CH4 sources should lead to new knowledge on the processes involving CH4 formation and emission pathways. Nowadays stable isotope measurements for various CH4 sources are quite routinely made, but radiocarbon measurements have for long been too expensive and time consuming. For this reason a new CH4 sampling system for radiocarbon measurements was developed at the Laboratory of Chronology of University of Helsinki. The system allows sampling directly from the atmosphere or from different environmental sources using chambers. To demonstrate the functionality of the system it was tested and optimized in various laboratory experiments and in the field. The laboratory measurements showed that before combustion of CH4 to carbon dioxide(CO2), ambient carbon monoxide(CO) and CO2 can be removed from the sample gas by a flow for more than 10 hours with a flowrate of 1 l/min. After the CO and CO2 removal the CH4 in the sample gas is combusted to CO2. The combustion efficiency for CH4 was 100% with a flowrate of 0.5 l/min. After CH4 is combusted to CO2 it is then collected to molecular sieves and can be later on analyzed using accelerator mass spectrometer. The laboratory measurements, however, showed that due to adsorption of nitrogen(N2) to the molecular sieves, the 1g of molecular sieve material used in molecular sample sieve tubes was not sufficient for low concentration samples where the sampling times are very long. In the field, CH4 was collected from the atmospheric ambient air at Hyytiälä SMEAR II station, Juupajoki, Finland, and from tree and soil chambers. The radiocarbon content of the atmospheric CH4 was 102.27 ± 0.02 percent Modern Carbon (pMC) and 101.40 ± 0.02 pMC. These values were much lower than the expected values, indicating a large spatial and temporal variability. The CH4 collected from chambers closed around tree-stems had a radiocarbon content had of 113.60 ± 0.37 pMC, which was slightly higher than the 108.71 ± 0.37 pMC measured from soil chambers located in the nearby Siikaneva peatland. This indicated that a larger amount of CH4 emitted from peatland surface was recently fixed near the soil surface and a larger amount of the CH4 emitted from tree-stem surface was from older origin transported via roots from the deeper depths of the soil. There is, however, a possibility that the lower radiocarbon content from the peatland surface emitted CH4 was due to a significant contribution from old CH4 fixed before bomb effect, and which is diffused from deeper depths of the soil. This would explain the results from the autumn campaign where the radiocarbon contents were 91.84 ± 0.03 during nighttime and 104.26 ± 0.03 pMC during daytime. These results also indicated that during the daytime more of the emitted CH4 is fixed near the surface of the peatland soil. One additional CH4 sample was collected in January 2019 from the atmospheric ambient air at Kumpula, Helsinki, Finland using a significantly larger molecular sample sieve. This sample had a radiocarbon content of 52.40 ± 0.21 pMC. The old carbon in the sample originated from a fossil methane used in earlier laboratory experiments and indicated that the regeneration process for the larger sample sieve was incomplete. Overall the system functions very well, while collecting samples from environmental chambers, as the CH4 concentrations are left to build-up before collecting the sample. For atmospheric samples, for which the sampling times are higher, the sample sieve size and the regeneration time and temperature will have to be further investigated. In the future, more measurements of the radiocarbon content for individual CH4 sources are needed to provide better knowledge on the CH4 pathways. This portable system allows an efficient way to collect CH4 samples for radiocarbon analyzes from various locations.
  • Leinonen, Sara (2019)
    The literature part of the study reviewed the recommended gluten quantification method, immunological ELISA R5. R5 is a monoclonal antibody that recognizes mainly the epitope that is abundant in especially gluten protein subgroup, ω-gliadin. The current PWG-gliadin reference material used in ELISA leads to inaccuracy of the gluten content, because it cannot represent sample materials that differ in their gliadin composition. The aim of the experimental study was to compare the prolamin compositions of different wheat cultivars and their reactivity against R5 antibody in sandwich ELISA. The aim was to find the most suitable ratio of barley prolamin, C-hordein, to be used as a reference material for wheat gluten quantification. The ω-gliadin proportions of different cultivars were calculated from RP-HPLC-chromatograms. In order to compare the total wheat gluten reactivity of the cultivars in ELISA R5 with gliadin standard and C-hordein in different ratios (10, 20 and 30% in BSA), Km-values that measure the rate of sensitivity in the assay, were calculated. The method to separate gliadin- and glutenin subgroups in RP-HPLC was optimized (solvent to extract gliadin and glutenin, temperature, injection volume, gradient). For cv. Crusoe the ω-, α/β- and γ-gliadins and HMW- and LMW-glutenins were identified. The selected wheat cultivars were categorized into four groups. The proportion of ω-gliadin in total gliadin ranged from 0.8 to 14.1% between the cultivars, whereas for PWG-gliadin this has been reported to be 7.7%. In terms of similar reactivity (Km-value) in ELISA, 20% C-hordein was found to be the most suitable reference material (Km 90) for the selected wheat cultivars (Km average 92), instead of the current gliadin standard (Km 68). The advantage of C-hordein standard is that the concentration and thus reactivity can be adjusted to match the sample materials with different prolamin profiles. Unlike with current gliadin reference material, it can be used without any conversion factors, which improves the method accuracy.
  • Leppänen, Maija (2014)
    This thesis studies the current level of environmental management in the Ship Power business division within Wärtsilä corporation and aims to identify the related development needs. Hitherto environmental management has been mainly coordinated at the corporate level and implemented in local companies distributed geographically. Due to the recent organizational changes, however, the significance of division level environmental management in Ship Power has increased. The research goal is approached by examining the central elements of corporate environmental management and the challenges that the organizational structure places for it. Based on the findings, suggestions for further actions are given in order to develop the environmental management in Ship Power. Empirical data was collected through 35 qualitative interviews with Wärtsilä employees from different functions, business lines, and local companies in order to get a comprehensive view of environmental management in the Ship Power related activities. The interviews were semi-structured in order to provide answers for certain areas of concern, but also to enable the disclosure of topics not defined by the interviewer. The data is categorized into themes according to the theoretical background, and its analysis is based on inductive reasoning. Based on the findings, the environmental management in Ship Power is divided into two dimensions. The product-related environmental questions are handled in the business lines and the operational issues in the local companies. This fragmentation of the environmental knowledge causes inconsistent environmental focus at different organizational levels, and creates challenges to information sharing across the organization. The lack of corporate instructions on the environmental management system implementation has led to diverse practices in the local companies, and the lack of standardized documentation makes the internal comparison between them difficult. Therefore the experience gained from the local management systems does not support organizational learning throughout the corporation. While the product-related environmental aspects are the core of the business strategy, more attention could be paid to operational environmental management in Ship Power. For instance, the sharing of environmental knowledge could be strengthened in order to enhance employee awareness of the corporate practices and to facilitate the discussion of the best practices between the local units. A standardized documentation system would facilitate internal benchmarking and provide a means for centralized environmental performance follow-up. Because the local management systems are not sufficient to cover the global business processes, it would also be important to identify the environmental aspects in the Ship Power division. Furthermore, visible communication of the common environmental targets would help to create consistent environmental focus in Ship Power.
  • Heikkonen, Hanna-Lotta (2014)
    The goal of this research was to produce guidelines for an eco-labeling program of wood and paper products in the U.S. market. The factors affecting consumers’ willingness to pay for eco-labeled wood and paper products were examined using a metaregression analysis. A systematic literature review was conducted to examine what are the preferable on-product label characteristics. Results show that consumers in North America are willing to pay less for eco-labeled wood and paper products than European consumers. Wooden and durable goods are able to capture larger price premiums compared to less durable wood/paper products. Consumers are willing to pay more for eco-labeled products where the labels provide more information to the consumers. Among demographic variables, age is shown to positively influence the amount consumers are willing to pay for eco-labeled wood and paper products. Among desirable label characteristics contact information of the labeling agency and information about the environmental effects of the product were found important in addition to information enabling product comparison. Environmental non-governmental organizations are perceived as the most credible labeling providers as shown in past studies.
  • Elfving, Karoliina (2022)
    Catcher-protein and Tag-peptide originate from split CnaB domains of Gram-positive bacteria surface proteins, which are stabilized by spontaneous intramolecular isopeptide bonds formed between lysine and asparagine residues. However, there is a limited number of non-cross-reacting Catcher and Tag pairs available where the reaction occurs close to the diffusion limit, and which can be used in multiple fragment ligation to construct recombinant fusion proteins. Therefore, a new Catcher/Tag system – LplCatcher/LplTag – was developed in our group from CnaB domain of Lactobacillus plantarum. However, the ligation efficiency of this pair needs to be improved to expand the application possibilities. Therefore, there is a need for efficient library screening method, which allows to detect improved protein-peptide pairs where the covalent interaction takes place rapidly. In this study a new high-throughput in-vivo screening system was developed for visualizing the ligation of Catcher/Tag fusion proteins using splitFAST fluorogenic reporter system for detecting the phenotype, and Fluorescence-activated cell sorting (FACS) for separating the variants at single cell level based on fluorescence intensity. splitFAST is a system engineered by splitting a fluorescent protein named Fluorescence-Activating and absorption-Shifting Tag (FAST) into CFAST and NFAST. The system can be utilized in visualizing the protein interactions because once NFAST and CFAST associate, in the presence of a fluorogen, they form the active and highly fluorescent FAST protein. Herein, Catcher-protein was fused with CFAST and Tag-peptide with NFAST, which allowed detecting the Catcher-Tag ligation ratio based on fluorescence with splitFAST system. Next, a screening system was developed for detecting Catcher variants with improved ligation efficiency. The developed high-throughput screening system showed high potential since visualizing the protein ligation was possible, and hence the system could help in expanding the Catcher/Tag toolbox by allowing large mutant library analyzes.
  • Eklund, Tommy (2013)
    Large screens, interactive or not, are becoming a common sight at shopping centers and other public places. These screens are used to advertise or share information interactively. Combined with the omnipresence of smartphones this gives rise for a unique opportunity to join these two interfaces and to combine their strengths and complement their weaknesses. Smartphones are very mobile thanks to their small size and can access information virtually from anywhere, but suffer from overflow of information. Users have too many applications and web sites to search relevant information to find what they want or need in a timely fashion. On the other hand, public screens are too large to provide information everywhere or in a personalized way, but they do often have the information you need, when and where you need it. Thus large screens provide an ideal place for users to select content onto their smartphones. Large screens also have the advantage of screen size and research has indicated that using a second screen with small handheld devices can improve the user experience. This thesis undertook design and development of a prototype Android application for existing large interactive public screen. The initial goal was to study the different aspects of personal mobile devices coupled with large public screens. This large screen interface is also under development as a ubiquitous system and the mobile application was designed to be part of this system. Thus the design of the mobile application needed to be consistent with the public screen. During the development of this application it was observed that the small mobile screen could not support the content or interactions designed for a much larger screen because of its small size. As a result this thesis focuses on developing a prototype that further research could draw upon. This lead to a study of small screen graph data visualization and previous research on mobile applications working together with large public screens. This thesis presents a novel approach for displaying graph data designed for large screens on a small mobile screen. This work also discusses many challenges and questions related to large screen interaction with mobile device that rose during the development of the prototype. An evaluation was conducted to gather both quantitative and qualitative data on the interface design and the consistency with the large screen interface to further analyze the resulting prototype. The most important findings in this work are the problems encountered and questions raised during the development of the mobile application prototype. This thesis provides several suggestions for future research using the application, the ubiquitous system and the large screen interface. The study of related work and prototype development also lead to suggestion of design guidelines for this type of applications. The evaluation data also suggests that the final mobile application design is both consistent with and performs better than a faithful implementation of the visuals and interaction model of the original large screen interface.
  • Ruottu, Toni (Helsingin yliopistoHelsingfors universitetUniversity of Helsinki, 2011)
    As the virtual world grows more complex, finding a standard way for storing data becomes increasingly important. Ideally, each data item would be brought into the computer system only once. References for data items need to be cryptographically verifiable, so the data can maintain its identity while being passed around. This way there will be only one copy of the users family photo album, while the user can use multiple tools to show or manipulate the album. Copies of users data could be stored on some of his family members computer, some of his computers, but also at some online services which he uses. When all actors operate over one replicated copy of the data, the system automatically avoids a single point of failure. Thus the data will not disappear with one computer breaking, or one service provider going out of business. One shared copy also makes it possible to delete a piece of data from all systems at once, on users request. In our research we tried to find a model that would make data manageable to users, and make it possible to have the same data stored at various locations. We studied three systems, Persona, Freenet, and GNUnet, that suggest different models for protecting user data. The main application areas of the systems studied include securing online social networks, providing anonymous web, and preventing censorship in file-sharing. Each of the systems studied store user data on machines belonging to third parties. The systems differ in measures they take to protect their users from data loss, forged information, censorship, and being monitored. All of the systems use cryptography to secure names used for the content, and to protect the data from outsiders. Based on the gained knowledge, we built a prototype platform called Peerscape, which stores user data in a synchronized, protected database. Data items themselves are protected with cryptography against forgery, but not encrypted as the focus has been disseminating the data directly among family and friends instead of letting third parties store the information. We turned the synchronizing database into peer-to-peer web by revealing its contents through an integrated http server. The REST-like http API supports development of applications in javascript. To evaluate the platform s suitability for application development we wrote some simple applications, including a public chat room, bittorrent site, and a flower growing game. During our early tests we came to the conclusion that using the platform for simple applications works well. As web standards develop further, writing applications for the platform should become easier. Any system this complex will have its problems, and we are not expecting our platform to replace the existing web, but are fairly impressed with the results and consider our work important from the perspective of managing user data.
  • Grazhdankin, Evgeni (2018)
    We have developed a software for homology modelling by satisfaction of distance restraints using MODELLER back-end. The protocols used extend exploration of distance restraints and conformational space. We drive the models in optimization cycle towards better structures as assessed by the used metrics on DOPE score, retrospective distance restraint realization and others. Hydrogen bond networks are optimized for their size and connectivity density. The performance of the method is evaluated for its ability to reconstruct GPCR structures and an extracellular loop 2. The software is written in object-oriented Python (v.2.7) and supports easy extension with additional modules. We built a relational PostgreSQL database for the restraints to allow for data-driven machine and deep learning applications. An important part of the work was the visualization of the distance restraints with custom PyMOL scripts for three-dimensional viewing. Additionally, we automatically generate a plethora of diagnostic plots for assessing the performance of the modelling protocols. The software utilizes parallelism and is computationally practical with compute requirements on an order of magnitude lower than those typically seen in molecular dynamics simulations. The main challenges left to be solved is the evaluation of restraint goodness, assigning secondary structures, restraint interconditioning, and water and ligand placement.
  • Topp, Jenni (2023)
    Background and objectives: First, this research aims to understand Ghanaian student teachers' genuine thoughts and views on remote education and learning. Secondly, the interest is to find out how the student teachers see the use of remote methods in their future work and especially, how to teach practical skills remotely. Third, the broader goal is to take a stand on the development of teacher education in a time where sustainability issues, developing technology and crises challenging the global world are shaking up our world view in a new way. The bicycle model of the future home economics teacher, which guides systemic thinking and is based on a transformative learning concept, adapted for this study, is used to help the examination of the results. To support future orientation, the data is also examined with the help of 21 century competencies on teaching and learning. Finally, this master's thesis is an article-form thesis, and its purpose is to produce a scientific article, as well as this summarizing section describing the background work and research process of the article. Context: The concept of remote teaching and learning used in this study refers specifically to learning and teaching that takes place online with remote connections. Such learning can be real-time or asynchronized learning through online platforms. These do not necessarily require a constant network connection but rely on digital pedagogy. Methods: The data of this qualitative online study was collected through WhatsApp interviews and the informant group consisted of nine Ghanaian student teachers. The research data has been analyzed with theory-based content analysis, using the bicycle model on comprehensive climate education as a guiding theory. The bicycle model was modified from the original to suit this study. Results and conclusion: The results of this study clearly indicate both that remote teaching and learning has become a permanent part of Education, but also that remote methods, related to technological knowledge and interaction skills should be further developed in teacher education. The informants of the study saw an interactive, communal, and learning environment that utilizes peer learning but also takes individuals into account as particularly meaningful when thinking about their own learning but also their future work as a teacher.
  • Ghelawi, Asma (2022)
    The present study aims to explore teachers’ experiences in actively teaching speaking skills in EFL classrooms in Finland. It focuses on the teaching practises which result in developing the learners’ spoken language. The main research questions are specifically determined to investigate the current situation of teaching speaking skills in upper secondary education in Finland from the teachers’ perspective, including the teaching practises which the teachers have experienced as useful in developing oral skills at this level. Additionally, the objective of the research is to examine the factors which constrain and challenge the teaching of speaking skills. The research data was collected by conducting individual semi-structured interviews, and the responses were analysed using qualitative methods. The theory chapter draws on concepts related to communicative competence and the role it plays in developing oral production in foreign language learning as well as practical strategies suggested to enhance and support learners’ experiences in learning speaking in the target language. The data consist of five interviews with Finnish upper secondary school teachers with varying teaching experience. The main findings based on the interviewees’ responses indicate that the teachers are guided by textbook materials in developing oral skills. The analysis also shows that since teachers have great autonomy in their teaching, they do also use additional materials, which focus on developing oral communication strategies and free production. These materials are also designed to engage and motivate learners to participate in oral tasks. The respondents emphasised the importance of creating a supportive atmosphere for developing oral skills and use this as the starting point of their teaching of speaking skills. Moreover, special attention is paid to teaching pronunciation, particularly the problematic sounds and intonation, which can impede the understanding of the conveyed message. The main challenges identified by the respondents were the negative washback from the Matriculation examination as well as learners’ low motivation and timidness.
  • Hagos, Elias Nahusenay (2015)
    Ethiopia is Africa's biggest coffee exporter nation with deep history. Coffee discovered in Ethiopia and it continues to be pivotal for the country in many fronts till to date. The coffee linkage with Ethiopia is deep-rooted many historians believe back in 9th century coffee discovered by Kaldi, a goat herder. He discovered it after noticing coffee's energizing effect on his goats. The word coffee itself also derived from place called 'Kaffa' where the trees blossomed. Coffee gradually became a world obsession by spreading from highlands of Ethiopia traveled along spice routes to Yemen, Turkey and Europe. Coffee exporting is a significant portion of Ethiopian economy. It accommodates more than twenty five million peasants which indicate its magnitude for the country. It is one of the leading sources of income for the government and other stakeholders. The establishment of Ethiopian Commodity Exchange (ECX) has seen the Ethiopian coffee trade system being transformed. It created a platform of primary, secondary and tertiary market divisions. In a way that the coffee can be traded based on value addition from one division to the other. Unlike the previous centralized warehousing system, it introduced decentralized warehousing and liquoring centers across the country where the coffee quality checked by use of laboratory tasting. It gives a temporary produce storage services until the coffee is sold and ownership of the produce transferred from seller to buyer. The introduction of modernized and transparent system enabled economic gain and helped farmers to enhance their life conditions. The objective of this study was to identify some of the contradictions that are solved in Ethiopian coffee trade activity by the establishment of ECX. In addition, the emerging contradictions and prevailing disturbances at present as well as the overall benefits it brought in relation to farmers' day to day life conditions were analyzed.
  • Valtonen, Katja (2021)
    Lukivaikeus on verrattain yleinen oppimisvaikeus, johon jokainen opettaja luultavasti törmää uransa aikana. Koska lukivaikeuden taustalla on kielitietoisuuteen ja erityisesti äännetietoisuuteen liittyviä ongelmia, se aiheuttaa erityisiä hankaluuksia lukemisen ja kirjoittamisen lisäksi myös vieraiden kielten oppimisessa. Näin ollen olisi tärkeää, että vieraiden kielten opettajat ymmärtäisivät lukivaikeuden taustoja sekä eriyttämiskeinoja, jotka hyödyttävät erityisesti lukivaikeudesta kärsiviä vieraiden kielten oppijoita. Siksi tämän tutkimuksen tarkoituksena oli kartoittaa suomalaisten englanninopettajien kokemuksia lukivaikeuteen liittyen. Tutkimuksen tavoitteena oli selvittää, (1) mitä englanninopettajat tietävät lukivaikeudesta ja mistä he ovat tietonsa saaneet, (2) millaisia asenteita heillä on lukivaikeudesta kärsiviä oppilaita ja opiskelijoita kohtaan, (3) millaisina he näkevät lukivaikeuden vaikutukset englannin oppimiseen ja (4) miten he ovat ottaneet lukivaikeuden huomioon opetuksessaan. Kysymyksiin etsittiin vastausta kyselytutkimuksen keinoin. Kyselyä jaettiin sosiaalisessa mediassa ja sen täyttäminen tapahtui internetissä. Kaikki osallistujat (n = 72) olivat muodollisesti päteviä opettajia ja opettivat englantia suomenkielisissä alakouluissa, yläkouluissa, lukioissa ja/tai ammattikouluissa. Kyselyllä kerätty aineisto sisältää sekä määrällisiä että laadullisia tietoja. Määrällinen aineisto analysoitiin deskriptiivisin tilastollisin menetelmin ja laadullinen aineisto sisällönanalyysin keinoin. Tutkimukseen osallistuneilla opettajilla oli verrattain hyvä tietämys lukivaikeudesta, vaikkakaan he eivät kokeneet omaavansa tarvittavaa tietotaitoa lukivaikeudesta kärsivien oppijoiden tukemiseen. Lukivaikeutta ei joko ollut käsitelty ollenkaan tai ei riittävästi osallistujien opettajaopinnoissa. Sen sijaan osallistujat olivat saaneet tietonsa lukivaikeudesta muista lähteistä, kuten erityisopettajalta tai kirjallisuudesta oman aktiivisuutensa turvin. Osallistujien asenne lukivaikeutta ja siitä kärsiviä oppijoita kohtaan oli laajasti ottaen positiivinen. Opettajan näkökulmasta lukivaikeus vaikeuttaa englannin oppimista sanaston, kieliopin, kirjoittamisen, lukemisen, kuuntelun, ääntämisen ja äänne-erittelyn osalta. Oppijoilla saattaa myös olla erilaisia negatiivisia tunteita itseään, kieliä tai oppimista kohtaan. Lisäksi lukivaikeudesta kärsivät tarvitsevat enemmän aikaa tehtävien tekemiseen kuin luokkatoverinsa. Lähes kaikki osallistujat ovat ottaneet lukivaikeuden huomioon opetuksessaan esimerkiksi eriyttämällä arviointia, materiaaleja ja opetustaan. Osallistujille tutuimpia eriyttämisen keinoja olivat arvioinnin eriyttämiseen liittyvät keinot sekä sellaiset keinot, joita yleisesti käytetään kaikkien oppimisvaikeuksien huomioinnissa ja kaikkien oppiaineiden opetuksessa. Osallistujille vähemmän tuttuja olivat opetuksen eriyttämiseen liittyvät keinot, joita suositellaan nimenomaan lukivaikeudesta kärsiville vieraiden kielten oppijoille. Tutkielmassa pohditaan, miten hyvin opettajakoulutus valmistaa opettajia käytännön työhön, ja kritisoidaan sitä lähtökohtaa, että lukivaikeudesta kärsiviä kielten oppijoita tuetaan kouluissa ensisijaisesti arvioinnin keinoin oppimisen edesauttamisen sijaan.
  • Kauppala, Tuuli (2021)
    Children’s height and weight development remains a subject of interest especially due to increasing prevalence of overweight and obesity in the children. With statistical modeling, height and weight development can be examined as separate or connected outcomes, aiding with understanding of the phenomenon of growth. As biological connection between height and weight development can be assumed, their joint modeling is expected to be beneficial. One more advantage of joint modeling is its convenience of the Body Mass Index (BMI) prediction. In the thesis, we modeled longitudinal data of children’s heights and weights of the dataset obtained from Finlapset register of the Institute of Health and Welfare (THL). The research aims were to predict the modeled quantities together with the BMI, interpret the obtained parameters with relation to the phenomenon of growth, as well as to investigate the impact of municipalities on to the growth of children. The dataset’s irregular, register-based nature together with positively skewed, heteroschedastic weight distributions and within- and between-subject variability suggested Hierarchical Linear Models (HLMs) as the modeling method of choice. We used HLMs in Bayesian setting with the benefits of incorporating existing knowledge, and obtaining full posterior predictive distribution for the outcome variables. HLMs were compared with the less suitable classical linear regression model, and bivariate and univariate HLMs with or without area as a covariate were compared in terms of their posterior predictive precision and accuracy. One of the main research questions was the model’s ability to predict the BMI of the child, which we assessed with various posterior predictive checks (PPC). The most suitable model was used to estimate growth parameters of 2-6 year old males and females in Vihti, Kirkkonummi and Tuusula. With the parameter estimates, we could compare growth of males and females, assess the differences of within-subject and between-subject variability on growth and examine correlation between height and weight development. Based on the work, we could conclude that the bivariate HLM constructed provided the most accurate and precise predictions especially for the BMI. The area covariates did not provide additional advantage to the models. Overall, Bayesian HLMs are a suitable tool for the register-based dataset of the work, and together with log-transformation of height and weight they can be used to model skewed and heteroschedastic longitudinal data. However, the modeling would ideally require more observations per individual than we had, and proper out-of-sample predictive evaluation would ensure that current models are not over-fitted with regards to the data. Nevertheless, the built models can already provide insight into contemporary Finnish childhood growth and to simulate and create predictions for the future BMI population distributions.
  • Pasupulate, Avinash (2015)
    The aim of this study was to develop and apply a high throughput and cost effective method for screening food samples for antibiotic contamination. This method can be used to reduce the number of samples that have to be analysed using expensive chemical methods that are at currently being used for determining antibiotic concentrations. The primary objective of this study involved the construction of a macrolide sensitive bacterial bioreporter, which can be used to detect the levels of macrolide antibiotics in meat samples. The bioreporter was constructed by merging a macrolide promoter region to a bioluminescent signalling gene like the lux operon, this fused segment was then cloned into a suitable vector and transformed to a host E. coli along with the repressor (producing) plasmid. The bioreporter works in the presence of macrolides, when the repressor protein is released from the promoter region, resulting in the expression of the lux operon, which produces light. This light signal can be used for the detection and estimation of macrolide antibiotics using a luminometer. The secondary objective was to use the macrolide bioreporter along with a previously constructed tetracycline bioreporter to measure antibiotic concentrations in bovine meat samples acquired from EVIRA (Finnish Food Safety Authority). On analysis of the resulting luminescence data, calculated concentrations of oxytetracycline were found to be in correlation to the data acquired from EVIRA and also using solid meat samples in assays, instead of extracted muscle fluid produced more accurate results. This shows the usability of bioreporters in the detection of antibiotics in animal-based foods from different sources. The resulting data can also be used to monitor and control the spread of antibiotic resistance through animal farms.
  • Koirala, Prabin (2018)
    The current multidisciplinary interests on human intestinal microbiomes have stimulated large scale research initiatives, involving collection and processing of up to thousands of fecal samples within a single study. Hence, there is a need for high throughput protocols that are cost-efficient and validated for their performance to ensure that the relative abundance of different bacteria, the main outcome of microbiota studies, is not biased due to technical artefacts originating from sample processing. Infant’s microbiota colonization is one of the central research areas in human microbiome research because of the long-lasting and profound health implications of the pioneering microbes. This experimental study aimed to develop and validate a high throughput fecal sample collection and processing system for microbial DNA extraction operating in 96 well format. This newly developed method was used to extract DNA from 647 fecal samples collected from mother-infant pairs within a clinical study that will study the effect of antenatal antibiotic prophylaxis on infant’s gut microbiota development. A subset of 28 mother-infant pair samples (14 from each antibiotic and non-antibiotic groups) were selected to study the prevalence of a probiotic bacterium, Lactobacillus rhamnosus GG (LGG), among infants and their mothers longitudinally from birth to 3 months by using species-specific PCR amplification method targeting sortase C gene. In addition, the prevalence of L. rhamnosus GG in 3-month-old infants was compared between the above samples and those (n=30) collected in another clinical trial conducted ~10 years earlier. From extensive testing and validation, an efficient high throughput system for fecal sample collection and processing for extraction of microbial DNA in 96 well format was established. Tests were performed to validate the performance of a) fecal sample collection system b) commercial, readymade bead beating tubes for bacterial cell lysis and c) selfmade wash buffers as part of the automatic DNA purification system. Performance was evaluated based on the quality and quantity of the resultant DNA. We show that this new fecal processing system can yield high quality microbial DNA from 96 fecal samples within ~6 hrs. Based on the ratios of dominant gram-positive and gram-negative bacteria evaluated using PCRs and next generation sequencing, the new DNA extraction method resulted into similar microbiota composition than the previously validated manual DNA extraction method. However, the DNA yield per sample was markedly lower due to the lower input volume of the sample. Based on the sortase C gene PCR tests, the prevalence of LGG was similar (~60%) among 3-month-old children in both clinical studies conducted ~10 years apart, although false negatives among the recent samples due to the low amount of DNA cannot be excluded. Following the temporal pattern of colonization, we observed no evidence for the transfer of LGG at the time of birth from the mother to her child, instead the infants became positive for LGG typically between 1-3 weeks after birth. The carriage of LGG seemed to be dependent on their diet. During this project, we found out that the PCR method employed for detection of LGG was not fully specific for this strain, and hence a more specific qPCR assay was developed.
  • Reunanen, Saku (2020)
    Parkinson’s disease (PD) is a neurodegenerative disease in which dopaminergic neurons that form the nigrostriatal pathway gradually die. This causes the main motor symptoms of Parkinson’s disease: tremor, rigidity and bradykinesia. While PD affects 1-2% of total population, all currently used medicines are symptomatic, and there is no disease modifying therapy available at present. Although several different animal models for Parkinson’s disease exist, the lack of adequate animal models is often cited as a major obstacle for predicting the clinical success of potential drug candidates. Lewy bodies (LBs) are abnormal aggregates that develop and spread inside nerve cells of human PD patients, their main structural component being α-synuclein. Because α-synuclein is thought to play a major role in the pathology of PD, much research has been focused on it. Different α-synuclein-based animal models of PD exist today, of which the most recent are based on using direct injections of preformed α-synuclein fibrils (PFFs). These new α-synuclein based disease models have helped to understand the disease process in PD better, but cell death in these models takes longer to achieve and is often less pronounced compared to traditional neurotoxin based animal models of PD. The aim of this study was to participate in the development and characterization of a novel mouse model of PD. This new model combines PFF-injections with the commonly used neurotoxin 6-OHDA, which should result in more robust dopamine pathway degeneration than what is seen with the current PFF-based models. The main hypothesis of this study was that the combination of intrastriatal injections of PFFs and a low dose of 6-OHDA would cause gradual spreading of the α-synuclein aggregation pathology in the nigrostriatal dopamine pathway and progressive dopamine neuron loss leading to motor deficits. C57BL/6 mice were stereotactically injected unilaterally with both PFF and 6-OHDA, and their performance was assessed every other week with different behavioral tests until week 12. At the end, brains were collected and optical density of tyrosine hydroxylase (TH) and dopamine transporter (DAT) was measured from striatal sections, and TH and DAT positive cells in the substantia nigra were counted. The amount of Lewy bodies present in the brain slices was also counted from the cortex and substantia nigra areas of the brain. In the histological assays, statistically significant reductions of both TH and DAT were found in the brain sections of the PFF + 6-OHDA combination group and the amount of TH and DAT positive cells were lower in this group compared to the group receiving vehicle treatment only. However, the results of behavioral tests were non-significant, although a non-statistical positive trend in the amphethamine-induced rotations test was observed where mice receiving PFF + 6-OHDA rotated the most. Taken together, combination model that utilizes both PFF and 6-OHDA injections seems like a promising candidate in modelling PD in mice, but much more research and further development of the model is required before this combination model is ready and robust for use in drug development.
  • Kazerani Garcia, Afsane Aurora (2021)
    Non-communicable diseases such as cardiovascular diseases (CVDs) and erosive, unsustainable industrial fat-production methods pose two of the biggest threats to human health in great part of our planet. CVDs and obesity have been linked to diets high in fat and low in dietary fibre, pushing food manufacturers to adapt to more sustainable ingredients. For this reason, this research developed and researched about a new and sustainable plant-based oleogel intended to act as a substitute for saturated and hydrogenated fats. Its characterization was conducted through several techniques, including optical and field emission electron scanning microscopy, differential scanning calorimetry, Fourier transmission infrared spectroscopy, and synchrotron X-ray powder diffraction. The results showed that the build-up of the formation of the new oleogel was possible, while ensuring that both processing requirements and ingredients are readily available at food manufacturing plants, globally. These findings pose a great opportunity for plant-based fat-replacement formulations, through a sustainable approach. Considering previous studies, this novel system could potentially help in reducing the burden of obesity and CVDs, turning it into a functional food component. Further research on food applications and digestibility models could give more insight on the future applications of this fat-replacement system.