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Climate change is one of the most major environmental challenges of our time. The upcoming decades will be crucial for delimiting the global average temperature rise to 1.5 - 2 degrees, as pointed out by the IPCC. Tackling climate change requires system-wide changes, emission reductions from all sectors and a shift towards low-carbon society. The global food system is responsible for circa 20-30 percent of global greenhouse gas emissions. Therefore, achieving the goal of carbon neutrality necessitates profound changes in the food system, i.e. in the ways our food is being produced and consumed today. This, in turn, necessitates a transition towards more plant-based diets. There is a scientific consensus that plant-based diets are - in addition to human health - also beneficial for the climate, as they produce less greenhouse gas emissions. Carbon-intensive lifestyles are especially characteristic for people in industrialized countries. Food covers roughly one fifth of the annual carbon footprint of a Finn. Finnish diets produce relatively large emissions mainly due to high consumption of meat and dairy. As food choices contribute to climate change, it is crucial to seek solutions in order to steer sustainable food consumption. In addition to the efforts of the public sector, proactive companies are also capable of steering or “nudging” sustainable food consumption also by other than conventional means, such as information provision and financial incentives. These means and their acceptability are addressed in this thesis. This thesis explores how Finnish consumers allocate responsibilities between the government, companies and consumers for mitigating climate change. In addition, this thesis elucidates how Finnish consumers perceive food manufacturers’ role and contribution (means) in steering food consumption towards more climate-friendly choices. The study conducted for this thesis was a consumer survey (n=504) and the target population was Finnish consumers aged between 18-74 years. The material was collected during August 2019, and statistical methods were mostly applied to analyze the results. One of the key findings of this study is that half of the survey respondents perceive a shared responsibility between the government, companies and consumers in mitigating climate change. While least responsibility is assigned for consumers, their role is not, however, underestimated. It also seems like food manufacturers play an important role in steering climate-friendly food consumption in the respondents’ opinion. In addition, the respondents seem to be relatively accepting towards the fact of being steered by food companies in order to make more climate-friendly food choices. Also the means to steer consumer behaviour, which were addressed in this study, received a promising level of support from the respondents. The findings of the study shed light on the food industry’s opportunities to influence climate-friendly food consumption and can help to develop policies that aim to mitigate climate change and promote more sustainable culinary culture.

The bioluminescent and toxin-producing dinoflagellate Alexandrium ostenfeldii forms dense blooms in coastal areas of the Baltic Sea. Bioluminescence, light production by an organism through a chemical reaction, is a nocturnal, rhythmic phenomenon in surface algae. In this study, the bioluminescence pattern and rhythm of A. ostenfeldii was under investigation. Procedures for continuous bioluminescence measurements, to support dedicated environmental monitoring of toxic dinoflagellate blooms, were developed. The study consisted mainly of laboratory experiments. Semi-continuous field measurements were included for comparison. In the laboratory, the light production of monocultures of A. ostenfeldii was measured with a spectroluminometer or bathyphotometer, continuously during the night, or for several consecutive days. The method to stimulate bioluminescence was varied, as well as the recovery period of the cells after stimulation. Light regimes during growth and pre-measurement adaptation were also taken into account. The experiments confirm that bioluminescence in A. ostenfeldii follows a circadian pattern and can be stimulated with the chosen methods. Bioluminescence could also be stimulated after culturing in continuous light. Measurement parameters for rhythm experiments (stimulation frequency and recovery period), were optimised. Multi-day experiments in complete darkness suggested that sufficient energy was available to maintain bioluminescent response during one night, although an endogenous rhythm remained present. These experiments gave insight to the phenomenon of bioluminescence regulation in A. ostenfeldii, but also gave rise to new questions. Some repeated measurements resulted in very low bioluminescence intensity, without an obvious reason. The light regime is not the only factor controlling bioluminescence. The interplay between bioluminescence and the growth and condition of the cultures is of interest.

Sustainable consumption has become a widely debated topic in academic discussions, politics, the media, and consumer culture. The objective of this thesis was to identify the stories that are told about overconsumption and how responsibilities for the issue are distributed to different actors in these stories. Stories, in which events logically unfold and actors are positioned into different roles have a key role in the articulation of understandings of phenomena. 13 online news articles and two editorials published in three Finnish news media and the related news discussion forums were chosen as an empirical example of public discussion that shapes and reflects common perceptions on the issue. The news articles and editorials include references to the Earth Overshoot Day, limiting the context of the thesis to overconsumption that is defined based on the limits of the planet’s biocapacity. With the help of a qualitative narrative analysis, four storylines were constructed. These storylines are overconsumption by overpopulation, greed and impossible endless growth; one world, shared challenge, and technology as the problem and the solution. The most frequently mentioned actors across the storylines are citizens, developing and wealthy nations, decision-makers and politicians, businesses, and wealthy elite. Besides reflecting both academic discussions and previous literature on narratives about sustainable consumption, the presence of population dynamics and the conflict between socio-economic development and environmental well-being was notable in the analyzed discussions. The incomplete narrative structures, missing roles, and diverse elements included in the storylines reflect the complexity of the issue and the struggles related to articulating a coherent story with a sufficient solution and actors capable of solving the issue. To clarify the discussion on the topic, it is suggested that the distribution of the responsibilities and opportunities to improve the situation amongst actors should be addressed in the communication on sustainable consumption and the Earth Overshoot Day.

Urbanisation is rapidly increasing, along with the use of artificial lighting, which poses a growing threat to wildlife, especially nocturnal fauna. Bats are nocturnal mammals that prey on light-sensitive insects, making them particularly vulnerable to the effects of artificial light sources. Responses to artificial lights vary among bat species, with some being strongly repelled while others appear to benefit from them. However, little attention has been given to the impact of light pollution on bats in northerly latitudes, where bright summer nights may influence the effects of artificial light on these animals. In my thesis I compared the presence of bats in artificially illuminated and unilluminated areas in urban parks in Southern Finland. To see the effect of bright nights in the early summer I collected acoustic data during two time periods: bright early summer (June), and dark late summer (August). My aim was to determine if different bat species respond differently to artificial light, if lamp type affects their response, and how natural light influences their activity patterns. I found that northern bats (E. nilssonii) were drawn to street lights in both early and late summer, and they seemed to prefer HPS (high-pressure sodium) lamps to LED (light emitting diode) lamps. Conversely, more light shy bats from the genus Myotis strictly avoided street lamps at all times. The strongest effect of natural light on bats was observed on their activity patterns: the timing of peak activity shifted considerably along with changes in natural light conditions. My results indicate possible changes in the responses of nocturnal wildlife to the changes in spectral composition of illumination along with increasing popularity of LEDs. The significant differences in the responses of different bat taxa to illumination highlight the importance of conservation of dark spaces and times.

Cells in tissues have only three serious options in life; they can grow and divide, remain static, or die by apoptosis. Upon growth factor stimulation a cell enters the so called cell cycle which will eventually lead to the division of the cell. Cell cycle can be divided into four phases; G1, S, G2 and M. The current model of the cell cycle control holds that the transitions between different cell cycle states are regulated by cyclin dependent kinases (CDK) with their activator subunits, the cyclins. CDK regulation can be separated into four distinct mechanisms, one of which being phosphorylation on the so called T-loop leading to complete activation. This phosphorylating activity is mediated by apparently a single enzymatic activity termed the CDK activating kinase, CAK. CAK activity was originally isolated as a biochemical purification extract and the enzyme was surprisingly noticed to be structurally related to CDKs. Since a novel cyclin was identified to be associated to it, the enzyme exercising CAK activity was named CDK7 and the cyclin was designated cyclin H. An entirely new perspective on CDK7 function was opened when CDK7 was identified as a subunit of transcription factor IIH (TFIIH) and shown to phosphorylate the carboxy-terminal domain (CTD) of RNA polymerase II (RNAPII). CDK7 has also been suggested to be involved in irradiation sensitivity pathways and nucleotide excision repair functions. To elucidate the intriguing in vivo role of CDK7, proteins interacting with CDK7 were screened for using the yeast two-hybrid method as part of previous studies of the laboratory. The results showed that 15 out of 144 (10,4%) positive clones were identified to encode a peptide sequence of a protein previously known as the inhibitor/interactor of protein kinase C (PKCI). These yeast colonies had an unexpected phenotype; contradictory to a dark blue color of the colonies, indicating strong interaction, the size of the PKCI colonies was small compared to others, indicating a possible growth inhibition effect. Several DNA open reading frames (ORF) coding for proteins related to human PKCI have been identified in a broad range of species representing mammalian, plant, fungal and bacterial kingdoms, all these forming a HIT (conserved triad of histidines) protein family. Another human member, part of this now super family, named FHIT (fragile triad of histidines) was identified with a dinucleoside 5’,5’’’-P1,P3-triphosphate hydrolase activity. These molecules; substrates of FHIT and related enzymes have been proposed to have various intracellular functions, including signalling stress responses. The aim of this study was to extend the investigation of the interaction between CDK7 and PKCI observed in yeast two-hybrid by means of several genetic and biochemical approaches to determine if this observed interaction and growth phenotype has any physiological significance. Investigations included performing yeast two-hybrid screening for PKCI, developing yeast three-hybrid system and carrying out growth rate assays for yeast liquid cultures. These studies also included performing biochemical purifications of over-expressed proteins, immunoprecipitations, western blot analysis and kinase activity assays. Protein extracts originated from transformed yeast cells, transfected mammalian cells or from in vitro transcription and translation reactions. On basis of growth rate assays it can be concluded that PKCI has an inhibitory growth effect in yeast. The preliminary finding of a specific PKCI-CDK7 interaction in yeast two-hybrid, however could not be conclusively verified by the other methods that were used in this study. Studies of PKCI characterisation also included examination of the subcellular localisation of PKCI in mammalian cells by immunofluorescence labelling of HA-PKCI. Results showed PKCI to localize both in the nucleus and in the cytoplasm. Also, studies to elucidate the function of PKCI were performed; whether it possesses enzymatic activity related to that of FHIT. By NMR spectroscopy using bacterially produced GST-PKCI, hydrolase activity towards ADP was indeed observed. Future studies will include elucidation of possible links between growth inhibition and hydrolase activity, in the form of stress signalling functions. The main focus of our future studies will be the generation of mice with targeted PKCI alleles offering powerful means to reveal the function of PKCI through observing phenotypes and through detailed analysis of these mice harbouring wild type, hypomorphic or null alleles.

Tiivistelmä – Referat – Abstract Cardiomyocytes derived from human induced pluripotent stem cells (hiPSCs) provide a good model to study their function in human context. The hiPSC technology allows to create patient-specific cell lines. The cell lines can further be differentiated into any cell type retaining the same genetic information as the donor. Heart diseases such as Long QT syndrome (LQTS) and Non-compaction cardiomyopathy are caused due to mutations in ion channels in cardiac cells. The genetic abnormalities in these channels can cause life threatening arrhythmias. However, the diseases remain undiagnosed until later stage of the disease and the first sign could be sudden cardiac death. Hence, understanding the disease mechanism at a cellular level is crucial. The aim of the thesis is to study the functionality of cardiomyocytes from patient specific cells to analyse if the clinical representation of the diseases can be seen at the cellular level. An additional aim is to compare and study the Ca2+ transients in patient-derived and control cells. One way to study the functionality of cardiomyocytes is by Ca2+ imaging. The method involves live cell imaging of differentiated cardiomyocytes using fluorescent dyes (Fluo4 AM and Cal520). The Ca2+ transients of diseases such as LQTS and non-compaction cardiomyopathy are recorded and further analysed by Clampfit software. The main findings of this study include a) different Ca2+ dyes (Cal520 and Fluo4) had different profiles in control cardiomyocytes b) a significantly different profiles were observed between the SCN5A-mutant and control cardiomyocytes c) the effect of adrenaline was most significant at low doses and when exposed for a short time; prolonged exposure to adrenaline leads to adrenaline receptor desensitization. Moreover, different types of arrhythmias have been detected in cell lines such as oscillations, plateau abnormality, multiple peaks etc. In conclusion, detection of Ca2+ transients may be an indicator of heart diseases due to genetic mutations which will further help in taking preventive measures.

Pohjoisilla soilla on suuri merkitys globaaleissa biogeokemiallisissa kierroissa niiden kerrostaman ja vapauttaman hiilen vaikutuksesta. Ilmastollisten tekijöiden on todettu olevan yhteydessä suon hydrologisiin vaihteluihin, kuten kuivumiseen, vettymiseen, routaantumiseen tai roudan sulamiseen. Muutokset suon hydrologiassa ovat menneisyydessä heijastuneet vuorovaikutteisesti soiden kasvillisuuteen ja niiden rooliin maailmanlaajuisesti merkittävinä hiilinieluina. Pohjoisten ikiroutasoiden ainutlaatuinen ja rikas habitaatti on vaarantunut nykyisen ilmaston lämpenemisen myötä. Maisterintutkielmani tavoitteena on arvioida mahdollisia ilmaston lämpenemisen aiheuttamia vaikutuksia pohjoisiin soihin tutkimalla viimeisten vuosisatojen aikana tapahtuneita muutoksia suokasvillisuudessa. Tutkielmassa selvitin, miten tutkimussuoni kasvillisuus on muuttunut ja millaisia yhteyksiä voidaan havaita eri ilmastovaiheiden merkittävimpiin lämpötilan muutoksiin. Keskityin analysoimaan näitä muutoksia kasvimakrofossiili-analyysin avulla. Näytesarjat ajoitettiin radiometrisin menetelmin. Tulokset osoittivat tutkimussuon käyneen läpi kuivan kasvillisuuden vaiheita sekä ilmastohistorian lämpiminä että kylminä ajanjaksoina. Nykypäivän lämpenemisen aikana eri näytepisteissä on tapahtunut sekä kuivumista että siirtymiä kosteaan suoekosysteemiin ikiroudan sulamisen jälkeisinä ajanjaksoina. Tutkimukseni tulokset auttavat osaltaan ymmärtämään ympäristössä ja ilmastossa tapahtuvien muutosten kompleksista vaikutusta pohjoisiin suoekosysteemeihin. Tutkimuksen perusteella voidaan arvioida nykyisen ilmastonmuutoksen mahdollisia vaikutuksia tutkimussuohon, sekä rinnan muiden tutkimusten kanssa yhteyksiä pohjoisten soiden tulevaisuuden hiilitasapainoon ja suuren mittakaavan biogeokemiallisiin kiertoihin.

Gender and sex are the most common criteria to classify people in our society. Along with legal and national core curriculum changes perceptions of gender and sex and their diversity has changed. This change is also reflected in learning materials. Learning materials play an important role in teaching and in the perceptions that students form about the role of gender and ability of different genders to influence society and professions. Gender inequality for men has been evident according to previous textbook studies. Gender stereotypes are also explicit. In this research the research material are human biology textbooks for secondary students during the past three national core curriculums. The purpose of this research is to examine how the gender, sex and their diversity are represented in human biology textbooks. Temporal variation is also examined. The qualitative content analysis was used as a principal method to analyse the data. Based on that method citations have been collected from textbooks. To compress the collected data the citations have been classified into different classes that explain the differences between sexes. The final classification has been made based on whether the differences between sexes appear in anatomy and physiology or behaviour and whether they are explained by biological or non-biological factors. Besides this, the collected data has been quantified and prototypes of male and female has been compiled. In quantitative analysis the textbooks visual representation and gendered words are also counted and analysed by simple quantitative methods. Based on this study the sex and gender are seen as a biological feature in human biology books. The differences between sexes are mainly affected by hormones whether the difference is in behaviour or anatomy and physiology. Genes also play an important role when differences in anatomy and physiology are explained between sexes. Psychological and cultural factors also explain a lot of differences in behaviour. Feminine characters and words were overrepresented in the textbooks compared to masculine characters. These are the result of the major role of motherhood and pregnancy in biology textbooks. The word mother was also used widely. In older textbooks the gender is represented more in texts and the differences between sexes are brought out more than in later textbooks. The gender stereotypes are also more evident in older textbooks and the stereotypical features are linked more to sexes, like conscientiousness in women and competitiveness in men. The gendered terms like “feminine” or “masculine” are also more present in older textbooks. Gender diversity is more talked about in later books, which is expected, as it is present in the latest national core curriculums. Otherwise the gender diversity is not very visible. Heteronormativity is present in all books, but for example the sexuality is treated more subtly than in older books. The temporal variation can be explained by the social change that is reflected in curriculums and textbooks. The textbooks should provide the most diverse picture possible of gender and its diversity. Therefore, images representing non-stereotypical and heteronormative gender roles should also be selected for books, and gendered expressions should be used deliberately in texts. However, it is important for gender equality that gender is not completely erased from textbooks. In gender-sensitive teaching, it is important that gender differences are not considered the norm, but they are also not hidden, but learn to identify gender stereotypes and their effects on one's own actions. There is no wrong way to be a boy or a girl. This material could be expanded by exploring the gender roles described in the textbooks as well. In addition, the research material could be compared to health information textbooks or other aspects of equality could be considered.

For a long time protected areas have been vital in conserving species and biodiversity. But due to climate change it is important to study whether the protected area networks are able to fulfill their goals also in a changing climate. Because of climate change the amount of southern species is increasing. At the same time the number of northern species is declining as are the suitable habitats for them. In order to adapt to changes in the climate, species are forced to shift their distributions poleward and upward. As a result, species communities are changing and some species may be threatened with extinction. It is therefore urgent to study whether the protected areas can alleviate the effects of climate change and whether they are capable to protect biodiversity in a changing climate. The aim of the study was to investigate whether the protected areas in Finland have been able to alleviate the effects of climate change in the bird species communities. The study was based on line transect bird censuses carried out in 182 protected areas during the years 1980–1999 and 2000–2015. Community temperature index (CTI) was used to study bird communities’ response to temperature change. Thus, CTI is used as a climate change indicator. CTI is based on the average temperature of the species range. A higher CTI value therefore indicates that a higher proportion of birds in the community are warm-dwelling species whereas the low CTI value indicates the opposite. The aim was to find out how the size of the protected area, connectivity between the protected areas and the type of habitat had affected the change of CTI between research periods. Protected areas were divided into three groups based on their location: northern, central and southern parts. 14 models were built in each part, ranked according to their AIC values. Linear regression analysis was used as the analytical method. During the research period, CTI had risen in 155 protected areas indicating a change in the direction of warmer bird communities. However, we found out that certain features of protected areas were able to alleviate the effects of climate change. Better connectivity decreased the changes in bird communities in the northern and central parts. But in the southern parts a similar effect was not found, possibly due to the smaller size of the protected areas and the lower degree of connectivity. The larger size of the protected area was supposed to reduce the changes in CTI but the results did not support this hypothesis. In all parts open habitats were more effective in alleviating the effects of climate change than the forest habitats. On the basis of the results, increasing the connectivity between protected areas could potentially be advantageous for the species suffering from climate change.

In this study 39 methicillin-resistant Staphylococcus aureus CC398 isolates from Finnish pigs and pork were sequenced by whole-genome sequencing. Also, phenotypic antimicrobial resistance of the strains was examined. The strains originated from the culture collection of Finnish Food Safety Authority (Evira) and they were isolated between the years of 2008 and 2017. MRSA strains were isolated from both asymptomatic and infected pigs and pork. The strains represented the four most common spa types in Finnish pigs (t034, t2741, t011 and t108). DNA extraction method for S. aureus was optimized by comparing automatic DNA extraction robot and manual DNA extraction method. Extracted DNA samples were sent to Germany to be sequenced with Illumina sequencing. Paired-end raw read sequences were assembled using three different algorithms: Spades, Idba and Velvet. The assembled sequences were analysed by bioinformatics tools. Possible antimicrobial resistance genes, virulence genes, plasmids and SCCmec cassettes were identified. The strains were also typed by spa typing and sequence typing. spa typing was already performed in Evira using PCR and the new spa typing results were compared to the PCR results. Using the assembled sequences, a phylogenetic tree was also constructed. Phenotypic antimicrobial susceptibility testing was performed using broth microdilution panel. The manual extraction method was slightly better since the extracted DNA was purer. The best assembly algorithm was Spades and because of that all sequences were assembled with that algorithm for further analyses. The strains carried only a few virulence genes and many genes that are important for human infection were missing. All the strains carried the same SCCmec cassette type and sequence type ST398 both of which are known to be typical for pig related MRSA. Illumina sequencing and spa typing were not working perfectly since the used program was not able to distinguish spa types t034 and t011 from each other. The problem was probably due to very similar short tandem repeats that these two spa types share. Also, Illumina sequencing is known to produce short reads that could be problematic for sequence assembly. All the strains were resistant to beta-lactams and tetracycline which is typical for MRSA CC398 strains. Many strains were also resistant to clindamycin and trimethoprim. Antimicrobial resistance seemed to be carried by plasmids in some cases because the strains carried several plasmids that are known to contain antimicrobial resistance genes. The antimicrobial resistance profiles were different between different spa types since some spa types were more resistant to certain antimicrobials than others. According to the phylogenetic tree, the strains seemed to be a very heterogenic group. The strains that belonged in the same spa type were most related to each other as expected. There were no differences between strains originating from pigs and strains originating from pork which strongly indicates that bacteria could have spread from pigs to pork. Asymptomatic pigs also carried similar strains as infected pigs. The strains that were causing infections in pigs did not contain any more virulence factors compared to the other strains. The study gave plenty of new information concerning MRSA CC398 in Finnish pigs and pork. The antimicrobial resistance and virulence patterns in addition to other qualities of the strains were very similar that was described in the literature before. The strains seemed not to be very virulent for humans, but the situation must be observed in case of increasing resistance and virulence. The best way to prevent spreading of MRSA is to decrease the amount of MRSA in pig farms since MRSA bacteria are most likely to spread from pigs to the environment and to the people who work in pig farms and from there to the rest of the population.