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Climate change causes climatic risks (hazard-exposure-vulnerability) that are experienced in agriculture as problems with increased precipitation, droughts, pest invasions and weather variability. Agriculture needs to adapt to these changing conditions to secure its continuation in future. It is the farmers, who in last hand take action for adaptation. Farmers are recognized as a stakeholder group in agricultural with plenty of skills to tackle varying weather conditions. In fact, farmers are already implementing adaptation measures, although it is not always driven by or aimed at climate change explicitly. Adaptation policies aimed at farm-scale are being planned and developed. The Intergovernmental Panel on Climate Change (IPCC) is the leading scientific source of adaptation policy recommendations. Currently it is recommending risk management approach for managing the known and unknown climatic risks that societies and sectors like agriculture are facing. In agriculture, for example, crop loss insurances are part of climate risk management. Farmers are making adaptation decisions at farm-scale based on their own beliefs and experiences, on information from variable sources, and guided by policies and legislation. The primary driver for taking adaptive action at farm, according to protection motivation theory (PMT), however, is the perception of risk – if the risk is assessed high enough and the adaptation is assessed possible. In this thesis, PMT and the theory of risk perception are used to explain farm-scale adaptation. Adaptation is examined as climate or weather variation driven adaptation measures implemented by farmers autonomously or guided by policies. A case study approach and stakeholder interviews were used because of the novelty of the study topic. By examining the case of ‘adaptation in Uusimaa agriculture’ through the perceptions of interviewed farmers and extension officers, an overview on farm-scale adaptation with its variety of influencing factors, and better understanding of risk perceptions as adaptation drivers is reached. Findings of the study show that farmers in Uusimaa are taking adaptation measures, but adaptation policies are not yet guiding adaptation at farm level and that farmers are divided by the ways they respond to climatic risks. Further studies on adaptation policies and agricultural adaptation should recognize the varying risk responses, the need for better adaptation policy guidance and farmers’ adaptation experiences and skills.

Climate change have widespread increasing negative health impacts on urban residents. The impacts vary in different temporal and spatial dimensions and include health impacts such as increases in heat related illnesses, respiratory issues, and vector-borne diseases. Vulnerability and exposure to those impacts depend on different interacting factors from city level systems to individual characteristics. Papers that study how cities’ moderating factors impact on different climate change induced health impacts are an important part for setting adaptation policies. Little is known how city systems and system factors (social and physical environment and policy and planning) moderate climate change induced health impacts in cities and their role in different vulnerability and exposure outcomes. With an analytical framework that utilizes systems approach and follows conceptual framework that considers city systems as moderating factors to different vulnerability and exposure outcomes, this thesis answers the questions: How are the city systems and system factors, and climate risk elements (vulnerability, exposure) related? And what are the different types of interactions that lead to vulnerability and exposure outcomes? The main data of this qualitative case study is collected with 18 expert pair-interviews. The experts are selected from four residential areas that represent different municipalities in Helsinki and Turku. The interviews are transcribed and coded with Atlas.ti. The findings of this study emphasize that moderating factors have an impact on different vulnerability and exposure outcomes. The results also show that adaptation measures that would consider cities moderating factors, would have a significant impact on reduced exposure and vulnerability to begin with. Identification of different city system, climate risk and health impact pathway synergies doesn’t promote better adaptation policies as such. Better understanding of efficient adaptation policies require further studies of the consequences resulting from the policy decisions in physical and social environment in the long run.

Tropical coral reefs are amongst the most biodiverse and productive ecosystems on Earth. In recent decades, coral reefs have suffered an unprecedented decline in habitat-forming hard coral cover due to anthropogenic stressors, with severe impacts on ecosystem functioning and the provision of ecosystem services. Some of the pressing issues that coral reefs are facing can be mitigated through active reef restoration, such as coral transplantation, which aims to increase the hard coral cover, biodiversity, and structural complexity of a reef site. Studies on the passive benefits that increase the natural recovery potential and resilience of coral reefs following active restoration efforts remain scarce. In collaboration with Indo Ocean Project, this study aimed to compare benthic recruitment patterns between three coral sites located within the Nusa Penida Marine Protected Area, Indonesia. The reef sites included a restoration site with gardened Acropora corals, a natural site, and a rubble site that could serve as a restoration site. The experiment was conducted using standardized settlement tiles to measure and observe various response variables as indicators for the natural recovery potential and resilience capacity of the reef. The sites were also surveyed for their benthic reef cover, structural complexity, and fish abundance and community composition. The research objective was to find out how benthic recruitment patterns differ between restoration and natural reef sites, and why. The results confirm that active coral reef restoration efforts induce co-benefits in the benthic environment through enhanced structural complexity, leading to subsequent increases in overall fish abundance and particularly the number of herbivorous fish, and thus to a lower density of turf algae. These are promising findings for the later development of the reef site. The results do not imply that restoration efforts directly translate into enhanced coral recruitment or increases in crustose coralline algae abundance. However, the plentiful supply of spats observed at the restoration site indicates that local coral recruitment can improve over time after the transplanted corals have healed from transplantation stress and become fecund. Finally, the current rubble area can be expected to function as a restoration area in the future, as it appears to be within the reach of coral recruits. This study demonstrates that active coral reef restoration can yield benefits for the whole benthic ecosystem, and thereby aid recovery and strengthen resilience at localized scales. Given the accelerated rate of coral reef degradation, regular monitoring of restoration success is crucial to avoid loss of information regarding the benefits of active coral reef restoration for the fragile benthic ecosystem.

Both microplastics (MPs, size 0.1 to 5 mm) and pharmaceuticals and personal care products (PPCPs) are ubiquitous in aquatic environments globally. Polystyrene microplastic (PS-MP) and diclofenac (DCF) are among the most widespread and commonly occurring MPs and PPCPs in the environment. Exposure to these chemicals in single has been reported to cause oxidative stress, immobilization, changes in growth and reproduction and even mortality in Daphnia magna. Moreover, MPs have the ability to act as a vector for PPCPs, and several laboratory studies have reported that PS-MP is able to absorb DCF. However, the combined toxicity of MPs and PPCPs remains largely unknown, especially as is the case for the combined toxicity of PS-MP and DCF in D. magna. In this study, D. magna was exposed to PS-MP and DCF, both in single and combined, at a concentration of 0.5 mg/L each. The aim was to assess the combined toxicity of the two, and determine whether they had a synergistic, additive, or antagonistic effect in D. magna. Whole organism endpoints monitored included mortality, immobilization, and moulting. Physiological endpoints monitored focused on oxidative stress and antioxidant defence, including reactive oxygen species (ROS), superoxidase dismutase (SOD), catalase (CAT), and glutathione S-transferase (GST). The results indicated that both PS-MP and DCF in single were able to significantly alter D. magna antioxidant and biotransformation enzyme activities by inhibition of SOD and GST, while there were no observed impacts on the monitored whole organism endpoints or ROS and CAT. However, similar significant inhibition of SOD and GST was not observed in the combined exposure, which indicates that the combined toxicity of PS-MP and DCF in D. magna was most likely antagonistic. These results highlight that the combined toxicity of MPs and PPCPs is a complex topic that still needs further investigation to fully understand the complex interactions between MPs and PPCPs.

Tiivistelmä – Referat – Abstract ROS or Reactive Oxygen Species can be found throughout all living organisms on the planet. Without ROS, processes, which are essential for the sustainment of most living organisms, such as respiration would not be possible. On the other hand, uncontrolled ROS generation can cause severe damage to the cellular structure. The family of ROS includes multiple compounds, which share a common trait of high chemical activity. ROS can be produced on demand by specific enzymes which are localized within cellular structures, such as membranes. One group of enzymes is called NADPH (Nicotinamide adenine dinucleotide phosphate) oxidases. These enzymes possess common structure which is composed of transmembrane region with multiple loop helixes and usually two or more terminal motifs, which are devised into regulatory EF-hand motifs and catalytic motifs. NADPH oxidases are essential ROS producers and can be found throughout most clades of living organism and are widely represented in different cellular compartments and distributed across different tissues in multicellular organisms. As an example, Nox family of NADPH oxidases can be found in human tissues and immune cells. Another common group of NADPH oxidases is respiratory burst oxidase homologues (RBOH) can be found in plants. Members of this group play important role in plant immune defense against pathogens. One example is AtRBOHD, which is expressed in Arabidopsis genus of plants. Upon activation, these enzymes are known to produce hydrogen peroxide (H2O2) as mean of antibacterial defense. These host defense mechanisms are known to be driven by different signaling molecules. It has been determined that in some examples of NADPH Oxidases, including Nox5 and RBOHD, the state of activation can be induced through the effects of Ca2+ ions. Moreover, it has been determined, that ROS-producing state of these NADPH oxidases is achieved through change of conformation. This change in conformation is attributed to the different modes of interaction of motifs of oxidases, which are dependent on concentration of bivalent cation Ca2+. Previous research regarding intramolecular interactions within specific NADPH oxidase- Nox5β has been performed by multiple research teams and different sources appear to contradict each other on the exact mode of interaction of Nox5β EF-hand upon presence of Ca2+. Therefore the exact interaction model of terminals of Nox5β is unclear. In addition, the effect of presence of Ca2+ on the interaction terminals in another representative of NADPH oxidases- AtRBOHD, which possess highly analogous molecular structure of catalytic C-terminus to Nox5β, has never been thoroughly studied, as well as interactive cross-compatibility of the C and N terminals from these two distinct species of NADPH oxidases. The objectives of this research are to analyze intramolecular interactions of N- and C- terminals in Arabidopsis RBOHD and Human Nox5β upon presence of ionic calcium, compare Ca2+-induced terminals interactions in said oxidases and to establish possible cross-compatibility of terminals in these two distinct NADPH oxidase species. Practical aspects of this research included cloning the C- and N- cytoplasmic regions of Nox5β and AtRBOHD into bacterial expression vectors utilizing the PIPE cloning method, heterologous production of epitope-tagged tails of NOX5β and RBOHD in E. Coli BL21 and finally in-vitro pull-down assays to analyse the interactions of the tails upon the presence of Ca2+ as well as interactive cross-compatibility of these tails. By utilizing methods mentioned above, this research has demonstrated that interactions of terminals motifs both in Nox5β and AtRBOHD are possible even in calcium-deprived environment, which was achieved through use calcium-binding agent (EDTA) and the effect of calcium on interactions of terminals both in RBOHD and Nox5β is very limited if not insignificant. This research has also demonstrated that the cross-compatible interactions between terminals of Nox5β and AtRBOHD are possible. Results of this research indicate a strong structural conservation within NADPH oxidases, which indicates similar intramolecular interaction mechanisms within two highly diverged species. These findings may prove to be useful as a background for the future research regarding ROS producing enzymes and evolutional conservation in structures of oxidases.

Suomesta tavataan kaksi majavalajia: alkuperäinen euroopanmajava (Castor fiber) ja vieraslaji amerikanmajava (Castor canadensis). Euroopanmajava metsästettiin sukupuuttoon 1800–luvulla ja viimeinen euroopanmajava ammuttiin tiettävästi Sallan Eniönjoesta vuonna 1868. Vuonna 1935 aloitettiin majavien uudelleenistutukset 17 Norjasta tuodulla euroopanmajavalla. Vuonna 1937 Suomen majavakantaa vahvistettiin seitsemällä Amerikasta tuodulla amerikanmajavalla. Tahallisesta vieraslajin tuomisesta ei kuitenkaan ollut kyse, vaan vasta vuonna 1973 todettiin Castor-suvun koostuvan kahdesta eri lajista. Alueilla, joille istutettiin molempia lajeja, on jäljellä ainoastaan amerikanmajava. Syyt ovat edelleen epäselviä. Molempien lajien kannat ovat edelleen keskittyneet alkuperäisten istutusalueiden läheisyyteen, ja amerikanmajavakanta on muutamia poikkeuksia lukuun ottamatta saanut kasvaa ilman euroopanmajavan kilpailun vaikutusta. Jos lajien elinympäristövaatimukset ovat samat, eivät lajit voi esiintyä rinnakkain. Näin ollen on tärkeää tuntea molempien lajien elinympäristön käyttö mahdollisemman tarkkaan aluekohtaisesti ja ennakoida, johtaako majavalajien kohtaaminen kahden lajin rauhaisaan yhteiseloon vai mahdollisesti euroopanmajavan häviämiseen läntisestä Suomesta. Tutkimuksen tarkoituksena oli vertailla lajien elinympäristön vaatimuksia ja sitä kautta tuoda lisätietoa euroopanmajavan suojeluun. Tutkimusalueeksi valikoitui keskinen Pirkanmaan alue, missä lajien välinen etäisyys on ainoastaan 11 kilometriä linnuntietä. Aineisto koostuu vuoden 2013 Luonnonvarakeskuksen koordinoimista valtakunnallisten majavalaskentojen pesätiedoista sekä erilaisista paikkatietoaineistoista. Elinympäristönkäytön mallin muuttujat on tuotettu CORINE Land Cover 2012 (CLC2012), vuoden 2011 Valtakunnallisen Metsien Inventoinnin (VMI) ja Maanmittauslaitoksen maastotietokannan digitaalisiin paikkatietoaineistojen avulla. Alueelle luotiin 60 satunnaispistettä, jotka kuvaavat tarjolla olevaa elinympäristöä. Lajien elinympäristöjen käyttöä analysoitiin kahden logistisen regressioanalyysimallin avulla, joista ensimmäisessä tarkastellaan ydinaluetta (50m) ja toisessa elinpiiriä (1km). Analyyseissä verrattiin lajeja keskenään sekä satunnaispisteisiin. Ennen regressioanalyysejä tarkasteltiin muuttujien kolineaarisuutta Variance Inflation Factor:in (VIF) avulla, jonka jälkeen tarkasteltiin aineiston yhteensopivuuttaa mallin kanssa Akaiken informaatiokriteerin (AIC) avulla. Pienin AIC ilmaisee parhaan mallin korkeimman selitysasteen ja mallin yksinkertaisuuden (parsimonisuuden) kompromissina. Ydinalueella ei havaittu merkitseviä eroja elinympäristön vaatimuksissa lajien välillä. Majavien elinympäristönkäyttö ei kuitenkaan ollut satunnaista. Kuusen tilavuudella oli positiivinen vaikutus euroopanmajavan esiintymiseen ja lehtipuiden tilavuudella oli positiivinen vaikutus amerikanmajavan esiintymiseen verrattuna tarjolla olevaan ympäristöön. Elinpiirianalyyseissä lajien välillä havaittiin merkitseviä eroja, joissa euroopanmajava esiintyi alueilla, missä kuusen tilavuus ja sekametsän osuus oli suurempi verrattuna amerikanmajavan elinpiiriin. Kasvavalla kuusen tilavuudella, sekametsän osuudella sekä vesistöjen määrällä oli positiivinen vaikutus euroopanmajavan esiintymiseen ja rakennetuilla alueilla negatiivinen vaikutus euroopanmajavan esiintymiseen verrattaessa tarjolla olevaan ympäristöön. Amerikanmajavan elinympäristön käyttö ei poikennut satunnaisesta. Tulokset saattavat heijastaa rantavyöhykkeen metsäsukkession eri vaiheita, mutta on huomattava, että lajien välillä oli merkittäviä eroja. Elinympäristön muuttujat selittivät huomattavasti enemmän euroopanmajavan esiintymistä alueella verrattuna amerikanmajavaan. Toisin sanoen euroopanmajavan elinympäristön vaatimukset ovat spesifimmät/tarkemmat/ominaisemmat. Tulosten avulla on mahdollista ennustaa niin amerikanmajavan leviämistä alueella kuin hyödyntää tietoja euroopanmajavalle tärkeiden elinympäristöjen suojelussa.

While the effects of agricultural land use on biodiversity are beginning to unravel in Europe and North America, Africa remains poorly studied. Biodiversity in a broad sense provides ecosystem functioning and services, whose importance has become obvious to humankind in the quickly changing modern world. In Ghana, the practice of mango farming continues to grow in popularity due to suitable climate and potential source of livelihood. With increased demand and production of mango, natural habitats, namely savannahs, are being converted to plantations. The effects of such habitat conversion on local biodiversity are unknown for most taxa, thus providing an interesting study system for biodiversity research. Given the direct relation between functional diversity and ecosystem services, in this work I compare the taxonomic and functional diversity of ground-living spiders between mango orchards and savannah. I chose spiders (Arthropoda; Araneae) as model organisms as they critically contribute to several ecosystem services, such as biological pest control and nitrogen cycling, while being ubiquitous and abundant, thus easy to collect in the field. Spiders were captured with pitfall traps from six mango and four savannah areas in the Northern region of Ghana. A total of 424 individuals and 53 (morpho)species were identified and counted. Additionally, six morphological and four ecological traits were quantified for each (morpho)species. With these data, I calculated taxonomic richness and evenness, functional richness, dispersion, and evenness, and beta diversity of the different assemblages in the R environment. These metrics were then compared between spiders collected from mango orchards and savannah. Mango orchards showed lower taxonomic and functional evenness than savannah, contrary to all other alpha diversity measures. The two habitat types share many of the same diversity of ground-living spiders, but species and traits are distributed less evenly in mango orchards due to incomplete niche differentiation between species. Both taxonomic and functional beta diversity were significantly different between habitat types indicating that mango orchards sustain a similar richness of species as savannah, but the species composition is different. In conclusion, mango orchards have the potential to conserve some aspects of the original diversity, but species composition and the way species interact are substantially different. We should strive to find the best practices to produce mango without radically changing the natural biodiversity patterns.

Genome wide linkage and association methods are used to map genes affecting traits with genetic predisposition. In this thesis, I compare the methods suitable for quantitative trait mapping in complex, extended pedigrees. As a case study, gene-mapping study of musical aptitude is performed with these methods. Linkage analysis methods are developed for family studies. However, only a few methods are suitable for extended families with a quantitative trait. Three linkage programs were successfully applied for such data in this study. These programs are the SOLAR, JPSGCS and KELVIN. All of these three programs are based on different methods and thus, the same calculations are not repeated. SOLAR is based on the variance components method, JPSGCS on a graphical method and KELVIN on the Bayesian method. Association analysis is also difficult to implement for large pedigrees, because it is best suited for case-control data. Fortunately, methods are extended also for family-based studies. Here, a genomic control method was used to correct for the familial relationships. The method evaluates the relatedness from the whole genome data and the association tests are corrected for the relatedness rates. This method was implemented from the GenAbel program. As a case study, these methods were applied to a musical aptitude study. The musical aptitude is here understood as an ability to perceive the melody, harmony and rhythm of music, and to recognize structures in set of sounds. These abilities were tested with Carl Seashore s tests for pitch and time and Kai Karma's test for auditory structuring. The data consists of 107 pedigrees and 93 sporadic subjects, comprising in total of 915 individuals. Each family includes 2 - 50 individuals. These individuals were genotyped with a SNP chip for over 700,00 SNPs. The linkage analyses revealed several promising loci for the musical aptitude. The best result was located in 4q12 and it was found with all of the three linkage programs. Most of the other results could also be identified with multiple programs, but some differences also occurred. However, none of the findings could be discovered with association analysis, probably due to a too small sample size.

The protein kinase C (PKC) enzyme is a type of peripheral membrane protein that is classified as a member of the Ser/Thr kinases superfamily. Its function is to add phosphate groups to serine or threonine residues in other proteins. The multitude of functions that PKC performs, and consequently its involvement in a diverse array of diseases, is attributed to the complicated nature of the enzyme: it consists of 12 distinct isoforms, each exhibiting minor variations in catalytic activity. Out of them, eight have therapeutic potential and utilize diacylglycerol (DAG) as a secondary signalling molecule. The research in this thesis is to perform computational modelling that assists an experimental research program searching for selective activators for PKC. The particular project involves combining molecular modelling with insight from structural biology. In concrete terms, three pieces of scientific work are involved: 1) The investigation of the behaviour in the membrane of drug candidate molecules that emerge as new scaffolds is developed by the experimental medicinal chemistry team. 2) Predicting the structure of PKCα, PKCδ, and PKCϵ using AlphaFold2 and evaluating their stability using molecular dynamic simulation. 3) Combining the predicted structures with DAG-containing membranes to examine predicted protein binding to the membrane. According to the results, 15 candidates out of 21 exhibited comparable behaviour to the positive control in terms of their angle of penetration into the membrane leaflets. Turning to regulatory domain prediction, all three proteins’ C1 and C2 domains were predicted with high confidence scores. All predicted structures showed root mean square deviation (RMSD) and root mean square fluctuation (RMSF) within the normal range, and most of their secondary structures were stable during simulation. When combined with the membrane, the C2 domains showed stable interactions with the membrane, and C2 binding to the membrane completely triggers C1 to bind to the membrane; however, there were some instabilities between the C1 domain binding and the membrane. This study highlights promising PKC activators, demonstrating the utility of computational modelling for identifying potential therapeutic agents.

Deforestation is the main threat to biodiversity, ecological integrity and socio-ecological resilience of the of the Amazon biome, one of the most biodiverse places on Earth and home to at least 2 million people. A complex network of diverse protection strategies exists across the Amazon as key component of the global strategy to halt biodiversity loss. Biosphere reserves are a part of this network that aims to create spaces to learn how human communities can develop sustainably, while the protecting the environment, by implementing a zonation system with different degrees of protection We consider that it is necessary to produce relevant efficiency assessments on area-based conservation strategies in this region, and to understand how different protection strategies affect conservation outcomes. We used state-of-the-art matching methods to create a counterfactual deforestation avoidance measure of seven Biosphere reserves the western Amazon: Yasuní, Podocarpus-El Cóndor, Sumaco, Manu, BIOAY, Pilón Lajas and Beni. We obtained diverse efficiency results, some of the studied reserves avoiding large quantities of deforestation to reserves that were attracting deforestation. We found that more strictly protected zones were subjected to significatively lower relative pressure levels and did not have higher deforestation avoidance values. Representativity of the matched treatment area was also lower for these zones, meaning that the matching analysis was more difficult to perform in these areas. These research findings add to growing evidence about the important role of biosphere reserves in buffering against deforestation in one of the world’s most important biodiversity hotspots.