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The Red List Index (RLI) has widely been recognized as a useful tool in keeping track of extinction risk trends of large taxa. The RLI is an index based on IUCN’s threat categories. Functional diversity (FD) is a way of measuring biodiversity that describes species´ traits that are linked to species´ ecological roles. In this work I have mapped the spatial distribution of the RLI and functional diversity for Finnish vascular plants. I first produced species distribution models (SDMs) for all 1194 species of vascular plants in the Finnish Red List 2010 based on records from the Kastikka and Hertta databases and environmental data. A functional tree incorporating 971 of those species was calculated using seven functional traits. The traits that I used were life form, maximum plant height, seed mass, seedbank longevity, life span, specific leaf area (SLA), and leaf dry matter content (LDMC). The trait data was gained from the databases Leda and TRY. Based on the SDMs, the functional tree, and the Finnish Red List, taxonomic and functional diversity and RLI were mapped for the whole of Finland using 10 x 10 km cells. This was the first time FD and RLI were mapped for vascular plant species across Finland. Null models were used to compare observed values with the ones expected if species (and consequently traits) distributions were random accross the country. Taxonomic diversity (TD) was higher than expected in southern Finland and lowest in northern Finland, suggesting a strong latitudinal gradient. TD correlated with the same environmental variables as FD. Thus, it is likely that both TD and FD are dirven by the same environmental variables. FD was higher than expected in southern and western Finland and lower in the northern and eastern parts of the country. A strong environmental filtering in the north might cause low FD by limiting species´ distributions within many clades and favouring species with similar traits that allow them to survive in extreme conditions. In southern Finland, competitive exclusion might limit the co-existence of species with similar traits, thus increasing trait divergence. The RLI values were lowest in the Åland islands, along the southern coast, in a few sites in eastern Finland (e.g. Koli and Kuusamo areas), around Kemi and the Gulf of Bothnia and in Kilpisjärvi. Thus, these sites have high concentrations of threatened species. The low RLI sites correspond well with areas with either limestone or dolomite deposits, which explains why many of these areas are floristically unique and present high concentrations of threatened species. In addition, many of the sites with low RLI are geographical extreme areas in Finland, corresponding to the distribution limits of many species. The RLI was high in Ostrobothnia and in large parts of Lapland. In Ostrobothnia, centuries of forest management and a homogenous bedrock and topography have resulted in a vascular plant community based mostly on common species. It is possible, that regional extinctions have happened in Ostrobothnia already before red listing measures began, thus explaining the high RLI values today. On sites with more variety among habitats and bedrock, the RLI values were significantly lower than in the rest of Lapland, suggesting that the high RLI values for parts of Lapland are due to homogeneous plant communities in the northern boreal forests that host only few threatened species. The spatial distribution of the RLI and functional diversity for vascular plants in Finland were mapped for the first time. A strong latitudinal gradient was found for TD and FD. Low RLI values were found on calcareous soils and on geographic extremes in Finland. To track possible changes in the RLI it would be crucial to remap the RLI in 2019 when the next Finnish Red List is published. A comparision between this work and the remapping based on the 2019 assessment would track changes in the extinction risk across Finland. The current limitation with RLI is that it only considers taxonomic diversity. However, in future work it is possible to incorporate the functional tree used in this thesis into RLI to calculate a functionally weighted RLI.

Flowability is an important powder character and, despite decades of research, there are still issues in finding a suitable measurement method. Common challenges are sample size and methodology’s suitability for cohesive powders due to their ability to form vault structures. Powder flowability properties depend strongly on particle features such as size and shape. As particles are in contact with other particles and materials, they receive electric charge and form bonds. In addition to these variables, the gravity and shear stress affect the powder. A combination of all these determine the powder properties such as flowability. Besides the particle properties, process and preservation conditions and especially humidity affects the powder properties significantly. Hence, the powder’s flow behavior varies in different conditions. There are several measurement devices available but none of them is able to yield intrinsic values. Reliability of the measurements presents another challenge as the measured values cannot be directly compared with published literature. Moreover, the flow measurement of cohesive powders is either impossible or extremely difficult with the devices currently available and the sample size needs to be sufficient. Hence, there is a need for new devices, which measure powder flow easily in small-scale. Small sample size is important especially when developing new, expensive drugs since their properties need to be explored in order to develop a new formulation. The aim of the empirical study was to develop a device, which measures particularly the flowability of cohesive powders in small-scale. A ground for the study was a device developed at University of Helsinki, which measures powder flowability by utilizing horizontal movement. In addition, the device breaks the problematic vault formation of cohesive powders by jolts. In the study a cuvette, which utilizes the horizontal movement and measures the powder flow, was developed. Flowability tests were run with five powders – Acetaminophen, Pharmatose 80M, Pharmatose 200M, Emcompress®, Avicel PH-101, Avicel PH-102, Avicel PH-200 and Maize Starch. The results were promising and the device was capable of classifying the powders by their flowabilities but more research is still needed.

Membrane-bound pyrophosphatases (mPPases) are a potential target for drugs against many neglected protozoan diseases, such as malaria, leishmaniasis, toxoplasmosis and trypanosomiasis. New drugs against these diseases are urgently needed, as the clinically used ones are either not effective, suffer from side effects, or resistance against them is developing. The mPPases of these protozoans are genetically conserved, while mammalian DNA does not encode them. A drug development project to find mPPase inhibitors was started, based on mPPase structures solved through X-Ray crystallography. Four hit compounds were identified. The aim of this study was to investigate the binding of these hit compounds at the mPPase binding site, and based on these results, to develop and synthesize novel compounds with higher affinity. A hit compound with an isoxazole ring was chosen as the model compound to be developed further. These novel compounds were evaluated by docking them into the binding site. Eight compounds were chosen to be synthesized and four to be purchased. The Suzuki-Miyaura cross-coupling reaction was used to couple the isoxazole core to different aromatic substituents, producing 3,5-disubstituted isoxazoles. The reactions mostly succeeded, but the yields were uniformly low. Developing the reaction using different solvents and reaction conditions did not produce clear results. Thirteen compounds were tested for activity, including an intermediate product of the synthesis. Two of the compounds showed increased inhibition activity compared to the hit compound, with approximated IC50 values of 10 and 40 μM, respectively. The knowledge gained from these studies can be used to further develop more efficient inhibitors.

Liposomes are nano-sized vesicles in which the aqueous phase is surrounded by lipid-derived bilayer. They are excellent drug vehicles for example in ocular drug delivery because they can, among other things, increase the bioavailability and stability of the drug molecules and reduce their toxicity. Liposomes are known to be safe to use, because they degrade within a certain period of time and they are biocompatible with the cells and tissues of the body. Owing to its structure, the surface of liposomes can also be easily modified and functionalized. Light-activated ICG liposomes allow drug release in a controlled manner at a given time and specific site. Their function is based on a small molecule called indocyanine green (ICG) which, after being exposed to laser light, absorbs light energy and thereby locally elevates the temperature of the lipid bilayer. As a result, the drug inside is released into the surroundings. The blood circulation time of liposomes has often been prolonged by coating the liposomes with polyethylene glycol (PEG). Although PEG is generally regarded as a safe and biocompatible polymer, it has been found to increase immunological reactions and PEG-specific antibodies upon repeated dosing. Conversely, hyaluronic acid (HA), is an endogenous polysaccharide, which is present in abundance for instance in vitreous. Thus, it could serve as a stealth coating material which extends the otherwise short half-life of liposomes. One of the main objectives of this thesis was to find out whether HA could be used to coat liposomes instead of PEG. In order to prepare HA-coated liposomes, one of the lipid bilayer phospholipids, DSPE, had to be first conjugated with HA. For the conjugation, potential synthesis protocols were sought from the literature. Ultimately two different reductive amination-based protocols were tested. Consequently, the protocol in which the conjugation was achieved via the aldehyde group of HA, proved to be working. Thereafter, HA-coated liposomes were prepared by thin film hydration from the newly synthesised conjugate as well as DPPC, DSPC and 18:0 Lyso PC. Calcein was encapsulated in the liposomes. HA-covered liposomes were then compared with uncoated and PEGylated liposomes by examining their phase transition temperatures, ICG absorbances, sizes, polydispersities, and both light and heat-induced drug releases. The aforementioned tests were also conducted when the effects of the HA and ICG doubling were examined and the possibility to manufacture HA liposomes with small size was assessed. HA-liposomes showed similar results as PEG-coated liposomes. In addition, successful extrusion of HA-liposomes through a 30 nm membrane was also demonstrated in the results. Doubling of HA did not significantly affect the results. In contrast, increasing the molar amount of ICG by double caused spontaneous calcein leakage even before any heat or light exposure. Based on these findings, HA could work as a coating material instead of PEG, yet further studies are required for ensuring this conclusion. The other key objective was to evaluate the stability of four different formulations, named as AL, AL18, AL16 and AL14, in storage and biological conditions. Based on the differences in the formulation phospholipid composition, the assumption was that AL would be the most stable of the group and that the stability would decrease so that AL18 and AL16 would be the next most stable and eventually AL14 would be the least stable formulation. As in the previous study, the liposomes were prepared by thin film hydration with calcein being encapsulated inside the liposomes. In the storage stability test, liposomes were stored in HEPES buffer at either 4 °C or at room temperature for one month. In the test conducted in physiological conditions, the liposomes were added either to porcine vitreous or fetal bovine serum (FBS) and the samples were incubated at 37 ºC for five days. Regardless of the experiment, phase transition temperatures as well as light and heat-induced drug releases were initially measured. As the test progressed, calcein release, ICG absorbance, size, and polydispersity were measured at each time point. The initial measurements confirmed the hypothesis about the stability differences of tested formulations. In the storage stability test, all formulations, except AL14, appeared to be stable throughout the study and no apparent differences between the formulations or temperatures were observed. On the other hand, the stability of liposomes stored in biological matrices varied so that the liposomes were more stable in vitreous than in FBS and the stability decreased in both media as expected.

The aim of this study was to provide information about using citizen science in biology education. Citizen science is a form of scientific research, where public can participate in data collection or other phases of research. It is important to study educational use of citizen science, because citizen science has a lot of potential to increase students´ interest towards biology and knowledge about scientific research. In addition, citizen science could provide meaningful ways to use information and communication technology (ICT) in education. Using ICT, such as computers and smartphones, has become very common way to collect data in citizen science projects. This is a case study about using citizen science project called Matoseuranta, as part of biology education. Research questions were: (1.) How the teachers that participated in Matoseuranta experience the educational use of citizen science? (1.1) What benefits and challenges there is in the educational use of citizen science, according to the teachers? (2.) How well data collecting with mobile application is suited in citizen science project that is used in education? (2.1) What challenges and benefits there were related to collecting data with Matoseuranta-application according to the teachers? (2.2) How the teachers evaluate their skills and knowledge executing fieldwork that includes ICT? Survey was used to collect data from teachers that participated in Matoseuranta. 49 teachers answered to the survey (n=49). Open-end questions were used to collect qualitative data about teachers´ experiences about educational use of citizen science (1.1) and mobile app (2.1). This qualitative data was then categorised using qualitative content analysis. Likert-scaled questionnaire based on TPACK (=technological pedagogical content knowledge), was used to collect quantitative data about teachers´ self-efficacy related to executing fieldwork that includes using ICT (2.2). According to teachers, the most important benefit of educational use of citizen science was the autenthic research context, which increased student motivation. In addition, teachers mentioned that Matoseuranta increased students´ knowledge about scientific research. The unreliability of collected data was the most often mentioned challenge. Teachers felt that collected data was not reliable because students had no prior experience in executing scientific research. The mobile app was suited well in data collecting, because it provided an easy way to send data to researchers. In addition, few teachers mentioned that the app motivated students. Unfortunately, the app had many technical issues, which was the most often mentioned challenge about using the app. Most of the teachers felt that they master the use of technology and the skills needed in executing fieldwork. However, only few teachers felt that they have sufficient skills to execute fieldwork that icludes using ICT in a meaningful way. Based on the results of this study, it would be important to offer more citizen science projects that are suited in educational use to teachers. It would be beneficial to study what types of projects (theme, execution, ICT) teachers would want to use in their teaching. Results confirm prior assumption, that the task value is a very important factor influencing student motivation. It is important to make sure that students feel their work in school is meaningful. This study also suggest, that there is a need to provide training and materials about how ICT can be used in biology fieldwork.

The motivation of this study was to find new treatment options for the rare cancer pseudomyxoma peritonei (PMP). PMP is a slowly progressing mucinous adenocarcinoma that originates from the appendix and disseminates into the peritoneum where the cancer cells secrete large amounts of MUC2, the main component of intestinal mucus, into the peritoneum. The disulfide isomerase AGR2 helps MUC2 with forming the correct intramolecular disulfide bonds prior secretion, and is essential to MUC2 protein production. The mucus build-up into the peritoneum causes stress on vital organs, and eventually death. Therefore, inhibiting MUC2 production in PMP cancer cells might slow down the disease progression significantly. MAPK/ERK and cAMP/PKA signaling pathways stimulate MUC2 production, and activating mutations in KRAS and GNAS of these pathways are common in PMP. The aim of this study was to elucidate how MUC2 and AGR2 affect each other’s expression levels, and how the MAPK/ERK pathway and the cAMP/PKA pathway targeting substances caffeine, theophylline, cromolyn, fudosteine, octreotide, and lanreotide, affect MUC2 expression in vitro. This study was conducted on human colorectal adenocarcinoma cell lines LS174T, LoVo, and HT29 that all produce large amounts of MUC2. In addition, LS174T and LoVo cell lines carry activating heterozygous mutations in their KRAS genes. MUC2 and AGR2 expression levels were measured on mRNA level with real-time quantitative reverse transcriptase polymerase chain reaction. The effects of MUC2 on AGR2 expression, and vice versa, were tested by silencing each at a time with the appropriate siRNA. MUC2 siRNA suppressed both MUC2 and AGR2 mRNA levels down to 50 % in LS174T cells and down to 40 % in LoVo cells in respect to their control groups. AGR2 siRNA suppressed AGR2 mRNA levels down to 50 % in LS174T cells and even down to 30 % in LoVo cells in respect to their control groups, while there were no statistically significant changes in MUC2 mRNA levels. Caffeine and theophylline inhibit phosphodiesterase of the cAMP/PKA signaling pathway, and in consequence, the hydrolysis of the secondary messenger cAMP, prolonging the activation of the pathway. Caffeine stimulated MUC2 production in LS174T and LoVo cells. In addition, AGR2 mRNA levels increased in LoVo cells, in which the fold change in MUC2 mRNA levels was much greater. Theophylline, a compound found in tea, and used for the treatment of asthma, did not affect MUC2 production. PMP cancer cells express protein S100P. Cromolyn is a pharmaceutical substance used for the treatment of asthma, and it inhibits S100P, and thereby S100P/RAGE signaling -dependent activation of MAPK/ERK pathway. Fudosteine, on the other hand, is a mucoactive pharmaceutical substance that lowers the production of MUC5AC, the main component of lung mucus. Since activating GNAS mutation stimulates the production of both MUC2 and MUC5AC in HT29 cells, the expression of both must be at least partially controlled by same mechanisms. In addition, Somatostatin analogues octreotide and lanreotide inhibit ERK1/2 of the MAPK/ERK pathway, as well as protein kinase A of the cAMP/PKA pathway, and hence cAMP production. However, none of these four tested pharmaceutical substances were able to inhibit MUC2 production in the cell lines used this study in vitro.

Functional in vitro cultured human hepatocytes are needed in different applications in biomedical research. Treatment for liver diseases is usually liver transplantation, but due to the lack of healthy donors, cell therapy using hepatocytes is considered as a better option. Drug industry will also need representative liver models to test metabolic profiles of drug molecules. Primary human hepatocytes are studied in cell therapy and disease modelling, but they have also drawbacks. In vitro they do not proliferate efficiently, and they are short-lived. In vitro differentiated human pluripotent stem cells (hPSCs) to hepatic fate are an alternative for the primary human hepatocytes. Especially human induced pluripotent stem cells (hiPSCs) are widely studied because they are easily available, and they even make personalized therapy possible without problems with ethical issues related to the human embryonic stem cells (hESCs). Differentiation to hepatic fate includes several steps before mature functional hepatocyte-like cells are formed. Hepatocytes are derived from the definitive endoderm (DE) which is one of the germ layers formed in the gastrulation process. Efficient induction of hPSCs into DE lineage would be a good starting point for generating mature hepatocyte-like cells in further hepatic differentiation. Different protocols to differentiate hPSCs in vitro into DE have been published. In vitro cell culture systems should well represent the environment of the target tissue because signals from the environment guide the differentiation. Three-dimensional (3D) cell culture systems are widely studied, because they better mimic the in vivo microenvironment of cells than two-dimensional (2D) cell culture. The aim of the thesis was to study the efficacy of the 3D differentiation of hiPSCs into DE. Before starting the 3D differentiation, differentiation protocol was optimized and the effect of ROCK inhibitor Y-27632 was investigated. Differentiation medium was supplemented with Y-27632 during the whole 6 days differentiation, because survival of the cells and formation of the spheroids were improved, and gene expression studies of pluripotency markers and several DE markers did not show evident effect of Y-27632 on the gene expression of hiPSCs. The main objective in the studies was also to investigate possible differences between different 3D culture conditions on hiPSCs differentiation into DE. Also, the effect of the spheroid size on differentiation was examined. Two different hydrogels were used as a matrix material in the experiments: basement membrane extract (BME) and nanofibrillar cellulose (NFC) hydrogels. Suspension culture was used as a biomaterial-free 3D culture system. Experiments were performed with three spheroid sizes: 200 cells/spheroid, 500 cells/spheroid and 1000 cells/spheroid. Efficacy of differentiation to DE lineage was estimated by studying protein and mRNA expression of some of the DE markers (HNF3B, SOX17, CXCR4, CER1), pluripotency marker OCT4, mesendoderm marker Brachyury and hepatoblast marker HNF4A in the cells. Spheroids differentiated in suspension and NFC were analysed by flow cytometry to get the number of DE positive live cells and dead cells using CXCR4 and 7-AAD double staining. Besides flow cytometry, protein expression of some of the key markers were studied by immunofluorescent staining and further confocal imaging. Viability of the spheroids in BME hydrogel culture were investigated using live/dead staining followed by confocal imaging. BME hydrogel culture was left out from the further experiments due to the morphology of the spheroids and results from viability and protein expression studies. Spheroids in suspension started DE differentiation faster compared to NFC culture. Suspension and NFC cultures yielded high number of double positive cells in flow cytometry and bright fluorescence of other DE markers was seen in the confocal images. NFC hydrogel proved to be a promising 3D culture system by supporting the differentiation of hiPSCs. Flow cytometry results and gene expression studies propose that four days long 3D differentiation would be efficient to produce sufficient number of DE cells. Smaller spheroids showed higher number of DE positive cells than bigger spheroids on day 2 but gene expression studies showed difference in DE marker expression between size conditions rather in later days in differentiation and it was the opposite. Experiments showed signs of more efficient differentiation of the smaller sized spheroids in the beginning of differentiation. But further studies are needed to verify the obtained results and both draw conclusions about the possible differences between different 3D culture systems and explore the best size of the spheroid for hepatic differentiation. However, results obtained from the studies are useful for designing further experiments.

In this master’s thesis I examine transdisciplinarity in theory and practice. Transdisciplinarity is seen as an inevitable approach when we strive to understand and solve many of the complex problems of the modern world e.g. the environmental crisis. For this reason it has also quickly increased in popularity in the research funding. With this premise and despite the diverse theory on transdisciplinarity the implementation in practice is often relatively flimsy. This gap between theory and practice has acted as a motivation to the thesis, in which I am interested in how the transdisciplinary expectations based on the theoretical ideals and set on the cross-disciplinary environmental research intersect with the realistic transdisciplinary advancements in the research programs. In addition, I am interested to know why the practice doesn’t meet the expectations. The thesis is solidly theory-oriented. First I shed light on the background, characteristics and motivations of transdisciplinarity as well as disciplines, after which I present an array of the complex challenges of transdisciplinarity. In the results section I examine the manifestations of the challenges on a practical level that is based on three environmental research programs organized over the course of 2011–2014 by HENVI, the Helsinki University Centre for Environment (now HELSUS). In addition to the qualitative analysis based on the interview data, the results section also examines theory on a more practical level of implementing transdisciplinary research programs in general. This presentation thus enables a closer dialogue between the analysis data and practical theory. The primary results of this thesis are five problematics that are the manifestations of theory not meeting the practice properly. They are organized into the themes of funding, knowledge production, administration, socio-culture and education and help to organize and ultimately face the challenges of transdisciplinary research. From a comprehensive set of perspectives the problematics display strongly the highly disciplinary nature of the modern academia. This is the most significant single reason for the difficulties to accomplish transdisciplinarity. In addition, all the five problematics reflect the temporal restrictions that also undermine the potential of an effective transdisciplinary interaction. The essential measures to create solutions and hence also the ideal implementation of transdisciplinarity are mainly beyond the focus of the thesis. However, the problematics provide a problem-based framework that strives to contribute to the further studies focused more profoundly on the actual solutions

Artificial light that produces some adverse effects is called light pollution. Light pollution has only recently been recognized as an environmental problem – it has been noticed to have adverse effects to organisms, ecosystems, human health and their well-being. The purpose of this study is to combine two aspects of light pollution that have so far gained little attention: the public’s point of view and the lighting solutions of municipalities and forest industry enterprises. These two aspects can be connected to each other through a concept called condition of lighting. Here the conditions of lighting consist of three areas with notable differences in lighting: city centers, countryside and forest industry production plants along with their surroundings. The study was conducted in South Karelia, Finland, and it was divided into two sections. The first section dealt with the public’s point of view on light pollution. The objective was to find out how South Karelians perceive the effects and obtrusiveness of artificial light both generally and also within areas of differing conditions of lighting. In addition, the intention was to uncover other factors that might influence the opinions of people. The second section of the study concerned the lighting solutions of municipalities and forest industry enterprises. The objective was to examine their lighting planning and implementation as well as the role of light pollution in the process. Interview was selected as the method of research in both sections of the study. The public considered electronic billboards and car headlights as the most obtrusive sources of light pollution. Bright lights and glare, on the other hand, were considered the most obtrusive types of light pollution. Most valued benefits of artificial light were its influence on safety, crime prevention and its positive effect on mood. Not being able to see the stars or experience natural darkness were considered as the biggest disadvantages of artificial light. The conditions of lighting in different areas also influenced the respondents’ experiences: people living in the countryside did not feel insecure in dark places outside the cities and did not consider abundant lighting pleasant. They also felt that being able to experience natural darkness was important. Among other factors, nature orientedness, light sensitivity, environmental attitudes and gender strongly affected the views of the respondents. In the municipalities and forest industry enterprises, the lighting planning concentrated on territorial plans. All but one of the municipalities and enterprises had taken light pollution into consideration at some level at least, but the forms and means varied. In the future both municipalities and forest industry enterprises will invest more in LED technology. The results show that artificial light can cause inconvenience to people who live outside the brightly lighted areas and who were not particularly interested in light pollution. Behind the inconvenience and disturbance were mostly the experiences, habits, values and attitudes of the respondents. The municipalities and enterprises have a lot to improve when it comes to light pollution. They should, for example, invest in comprehensive lighting planning, avoid over-illumination and pay attention to suitable direction and positioning of the light fixtures. In the future, it is important to examine the public’s opinion and to map the landscape of lights at a local scale. This would help in finding the most suitable lighting solutions for different areas. In the opinion polls, the subjective characteristics affecting the views of the respondents should be taken into consideration. Research regarding the municipalities and enterprises should be directed to the areas where light pollution is not regulated, in order to gather information on motivation and implementation of the voluntary activities reducing light pollution.

Gut inflammation and permeability is speculated to play a major role in the pathophysiology of several human diseases. Signs of a low-grade gut inflammation in patients with type 1 diabetes (T1D) have been found. Focus of this study was to understand the role of gut inflammation and increased gut permeability in the development of diabetic complications, especially nephropathy. Approximately, one-third of Finnish patients with T1D develop kidney disease during their lifetime. Inflammatory mechanisms may have an essential role in the pathophysiology of the disease. Lipopolysaccharide, LPS, is found in the outer membrane of gram-negative bacteria. LPS activates innate immune system and triggers the activation of inflammatory cytokines, neutrophils and macrophages as well as many pathophysiological processes in vivo, for instance fever and endotoxic shock. Aim of this study was to establish a zebrafish gut inflammation model using fluorophore conjugated endotoxin, LPS. We hypothesized that delivery of LPS in addition to EDTA in the gut of zebrafish triggers inflammation and increased gut permeability which may lead to leakage of LPS to blood stream and potentially kidney injury. This novel zebrafish inflammation model could possibly be used for studying the pathophysiological mechanisms of gut inflammation and possible kidney injury as well as for screening new anti-inflammatory drugs. In addition, this animal model can be used for studying intestinal alkaline phosphatase (IAP) in reducing gut permeability and LPS-mediated kidney damage. IAP is an enzyme produced in small-intestinal epithelium. IAP can detoxify several bacterial endotoxins including LPS and thus protect against the induction of intestinal inflammation. LPS and EDTA were delivered in the gut of 6 days old zebrafish larvae using microgavage injection. Fluorescence microscopy imaging of live zebrafish enabled following the same individual at different timepoints after injections. Paraffin sectioning of the small larvae was promising for investigating the morphology and permeability of the gut as well as possible immunostaining for detection of IAP. L-phenylalanine was used for inhibition of IAP enzyme. Using the novel method of microinjection to gut on zebrafish larvae the timing and amount of delivered materials to gut can be controlled well. The anatomy and function of the gut in zebrafish is very similar to small intestine of mammals and the highly developed vertebrate immune system makes zebrafish an interesting model organism for studying gut inflammation and permeability. In addition, inflammatory processes can be visualized in live, intact transparent zebrafish larvae. However, the technique has a lot of challenges including small size of the fish and possible tissue damage of the fish while performing injection. More experiments need to be carried out to establish the model for drug screening. Also, along with microscopy images, a more precise way for quantification the gut permeability is needed. Based on the images it’s not yet possible to conclude whether LPS increased gut permeability or if IAP inhibition with L-phenylalanine worked in zebrafish larvae. Using adult zebrafish in the future will give more information about the chronic gut inflammation and development of possible kidney injury.